View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_11 (Length: 643)
Name: NF21553_low_11
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Complemental strand, 54286285 - 54285686
Alignment:
| Q |
1 |
tcatcaggacaattggctttaagttgactgatgtcggaccattgaatttctattttacttttcagctcaccctcaagaacttcccaaacaagcttctgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54286285 |
tcatcaggacaattggctttaagttgactgatgtcggaccattgaatttctattttacttttcagctcaccctcaagaacttcccaaacaagcttctgtt |
54286186 |
T |
|
| Q |
101 |
tggcaaagtaacactttgccactaagtcaccttcatattttgatttatactgcaataaggacatcattgacatgacttaaattcatagaaaaacataaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54286185 |
tggcaaagtaacactttgccactaagtcaccttcatattttgatttatactgcaataaggacatcattgacatgacttaaattcatagaaaaacataaat |
54286086 |
T |
|
| Q |
201 |
ttcccaaaacacaaaaccacgtgcagaatctcgaacgtacctcccatgaaccaatttttaaatgtgtagctgggaaatttgaagccttcagcttttcaac |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54286085 |
ttcccaaaacacaaaaccacgtgcagaatctcgaacgtacctcccatgaaccaatttttaaatgtgtagctgggaaatttgaagccttcagcttttcaac |
54285986 |
T |
|
| Q |
301 |
tgaagcacgaccgttcttgttcgctttagagtttaaattatcatttgcagtatctgcattaactgaattctcttgacaaagcgtcatttgtatcaaatct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54285985 |
tgaagcacgaccgttcttgttcgctttagagtttaaattatcatttgcagtatttgcattaactgaattttcttgacaaagcgtcatttgtatcaaatct |
54285886 |
T |
|
| Q |
401 |
aacagtgaagggctcttcctgagacttaaacccaaagggctgggctcattaagtatatcattagtagcctaaacaaaacgcagaaccataatgagaaaaa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54285885 |
aacagtgaagggctcttcctgagacttaaacccaaagggctgggctcattaagtatatcattagtagcctaaagaaaacgcagaaccataatgagaaaaa |
54285786 |
T |
|
| Q |
501 |
gaagtcccaaaataaaagtataacattatttattaagtgtgtgtttagcttaaaaatatgattttgaatgaattgattctacaaaatttacgtgttgaat |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54285785 |
gaagtcccaaaataaaagtataacattatttattaagtgtgtgtttagcttaaaaatatgattttgaatgaattgattctacaaaatttacgtgttgaat |
54285686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 54299036 - 54298616
Alignment:
| Q |
1 |
tcatcaggacaattggctttaagttgactgatgtcggaccattgaatttctattttacttttcagctcaccctcaagaacttcccaaacaagcttctgtt |
100 |
Q |
| |
|
|||| ||||||||| ||||| |||||| |||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |
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| T |
54299036 |
tcattaggacaatttgcttttagttgagtgatatccgaccattgaatttctattttacttttcagctcacccacaagaacttcccaaacaatcttctttt |
54298937 |
T |
|
| Q |
101 |
tggcaaagtaacactttgccactaagtcaccttcatattttgatttatactgcaataaggacatcattgacatgacttaaattcatagaaaaacataaat |
200 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||||||||||| || ||||||||||| |||| ||||||||| | |||||||||| ||||| |||| | |
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| T |
54298936 |
tggcaaagcaaaactttgccaccaagtcaccttcatattttggttcgtactgcaataaagacaacattgacataagttaaattcattgaaaattataact |
54298837 |
T |
|
| Q |
201 |
ttcccaaaacacaaaaccacgtgcagaatctcgaacgtacctcccatgaaccaatttttaaatgtgtagctgggaaatttgaagccttcagcttttcaac |
300 |
Q |
| |
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|| ||||||||| || ||| |||||||||| ||| | |||| ||||||||| ||||| ||| |||||||||||||||||||||||| |||||||||||| |
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| T |
54298836 |
tt-ccaaaacac--aatcacatgcagaatcttgaatgaaccttccatgaaccgattttcaaacgtgtagctgggaaatttgaagcctgcagcttttcaac |
54298740 |
T |
|
| Q |
301 |
tgaagcacgaccgttcttgttcgctttagagtttaaattatcatttgcagtatctgcattaactgaattctcttgacaaagcgtcatttgtatcaaatct |
400 |
Q |
| |
|
||||| ||| ||||| ||| ||| ||||||||||||| |||||| ||||||||| | |||| |||| ||||| ||| |||||||||| |
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| T |
54298739 |
agaagcctgactcttctttttcacttcagagtttaaatta------ccagtatttgcattaaccggattcctttgaaaaagctctgtttctatcaaatct |
54298646 |
T |
|
| Q |
401 |
aacagtgaagggctcttcctgagacttaaa |
430 |
Q |
| |
|
|| | |||||||||||| ||||||||||| |
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|
| T |
54298645 |
aaaaacgaagggctcttcgtgagacttaaa |
54298616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 54305398 - 54305303
Alignment:
| Q |
190 |
aaaacataaatttcccaaaacacaaaaccacgtgcagaatctcgaacgtacctcccatgaaccaatttttaaatgtgtagctgggaaatttgaagc |
285 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||||| ||| | |||| || |||||| ||||||||| ||||||||| ||||||||||| |
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| T |
54305398 |
aaaatataaatttcccaaaacacaaaatcacatgcagaatcttgaatgaaccttccgtgaaccgatttttaaaactgtagctggtaaatttgaagc |
54305303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 46868251 - 46868362
Alignment:
| Q |
177 |
ttaaattcatagaaaaacataaatttcccaaaac-acaaaaccacgtgcagaatctcgaacgtacctcccatgaaccaatttttaaatgtgtagctggga |
275 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| |||||| ||| |||||||||| ||| | || | ||||||||| ||||||||| |||||| | || |
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|
| T |
46868251 |
ttaaattcattgaaaagtataaatttctcaaaaatacaaaatcacatgcagaatcttgaatgaacataccatgaaccgatttttaaaagtgtagttaaga |
46868350 |
T |
|
| Q |
276 |
aatttgaagcct |
287 |
Q |
| |
|
|||||||||||| |
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| T |
46868351 |
aatttgaagcct |
46868362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 1202916 - 1202998
Alignment:
| Q |
73 |
tcaagaacttcccaaacaagcttctgtttggcaaagtaacactttgccactaagtcaccttcatattttgatttatactgcaa |
155 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||||||| || ||||| || || ||||||||| | || ||||||||||| |
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|
| T |
1202916 |
tcaagaacttcccatacaagcttatgcttcgcaaagtaacatttcgccaccaaatctccttcatatctagacttatactgcaa |
1202998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 458
Target Start/End: Complemental strand, 36384234 - 36384154
Alignment:
| Q |
378 |
aaagcgtcatttgtatcaaatctaacagtgaagggctcttcctgagacttaaacccaaagggctgggctcattaagtatat |
458 |
Q |
| |
|
||||| || |||||||||||||||| || |||| ||||||| ||||||||||| | | |||||| || |||| |||||||| |
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|
| T |
36384234 |
aaagcttcgtttgtatcaaatctaaaagcgaagagctcttcgtgagacttaaaacgagagggctaggatcatcaagtatat |
36384154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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