View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_13 (Length: 632)
Name: NF21553_low_13
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 25 - 629
Target Start/End: Complemental strand, 42206366 - 42205743
Alignment:
| Q |
25 |
gctttgttcttttctaattggaataaaacactaatcctaacgattttccttcgtgcagcttcttgttgctggaggtggcatgtatgtagaggtttttaac |
124 |
Q |
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| T |
42206366 |
gctttgttcttttctaattggaataaaacactaatcctaacgattttccttcgtgcagcttcttgttgctggaggtggcatgtatgtagaggtttttaac |
42206267 |
T |
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| Q |
125 |
agaggtgttattccactagcatataacatccagaagaaaaacaaggaaggagaaaccaacacgtatatggatggcatctacctcctattcacctacttca |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42206266 |
agaggtgttattccactagcatataacatccagaagaaaaacaaggaaggagaaaccaacacgtatatggatggcatctacctcctattcacctacttca |
42206167 |
T |
|
| Q |
225 |
cgaagcctgagtccataaccccccttgagcaaacattattgagggatgataatgttatccgatcaacaagcttcaaaatcagaagaaggaaatattagtt |
324 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
42206166 |
cgaagcctgagtccataaccgcccttgagcaaacattattgagggatgataatgttatccgatcaacaagcttcaaaatcagaaaaaggaaatgttagtt |
42206067 |
T |
|
| Q |
325 |
tattttggcatctccagtagctctgnnnnnnngaatgtaacaatcatcatttgttgttgtggtatgttttctttcattttcatatggattcaagtatttt |
424 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42206066 |
tattttggcatctccagtagctctgaaaaaaagaatgtaacaatcatcatttgttgttgtggtatgttttctttcattttcatatggattcaagtatttt |
42205967 |
T |
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| Q |
425 |
tgtaacaaggttggattaaactaaaagagagatgtaggtgctattactggcagtctgcagagttataacacctagtacaaagtgctatatattagccaat |
524 |
Q |
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| T |
42205966 |
tgtaacaaggttggattaaactaaaagagagatgtaggtgctattactggcagtctgcagagttataacacctagtacaaagtgctatatattagccaat |
42205867 |
T |
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| Q |
525 |
ttgccattcggttgttca-------------------catatttagaggtagaagttcattttgttatcttaaatcatattaggaagaaagtttacaatg |
605 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205866 |
ttgccattcggttgttcacatatcaagtctaaattttcatatttagaggtagaagttcattttgttatcttaaatcatattaggaagaaagtttacaatg |
42205767 |
T |
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| Q |
606 |
actagtgatgaattggagaataat |
629 |
Q |
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|||||||||||||||||||||||| |
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| T |
42205766 |
actagtgatgaattggagaataat |
42205743 |
T |
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