View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_low_16 (Length: 597)

Name: NF21553_low_16
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_low_16
NF21553_low_16
[»] chr1 (6 HSPs)
chr1 (223-297)||(5622067-5622141)
chr1 (74-128)||(5621412-5621466)
chr1 (411-466)||(31915311-31915370)
chr1 (2-46)||(5621029-5621073)
chr1 (409-466)||(13441896-13441954)
chr1 (434-466)||(50857751-50857783)
[»] chr7 (5 HSPs)
chr7 (407-466)||(1217467-1217527)
chr7 (409-466)||(4303181-4303239)
chr7 (407-466)||(13882990-13883050)
chr7 (292-335)||(8915588-8915631)
chr7 (433-466)||(29175572-29175605)
[»] chr3 (8 HSPs)
chr3 (407-466)||(365858-365918)
chr3 (407-466)||(3064046-3064106)
chr3 (225-297)||(21423440-21423512)
chr3 (1-45)||(21424476-21424520)
chr3 (82-127)||(21424146-21424191)
chr3 (433-466)||(53012777-53012810)
chr3 (434-466)||(43304265-43304297)
chr3 (434-466)||(43306979-43307011)
[»] chr2 (4 HSPs)
chr2 (409-466)||(31636059-31636117)
chr2 (407-460)||(35681976-35682030)
chr2 (407-466)||(27952632-27952692)
chr2 (407-452)||(22011154-22011200)
[»] chr8 (3 HSPs)
chr8 (407-466)||(22512355-22512415)
chr8 (407-460)||(26377794-26377848)
chr8 (433-466)||(24730820-24730853)
[»] chr5 (3 HSPs)
chr5 (225-297)||(30634654-30634726)
chr5 (1-45)||(30635675-30635719)
chr5 (82-127)||(30635345-30635390)


Alignment Details
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 5622067 - 5622141
Alignment:
Q  223 gccaaatatcacctttagatgagattattaaatttaaagaaaaatgctgttttcgtattttactggatgagagca 297  Q
    |||||||| |||| ||||||||||| |||||||| || |||||||  ||||||||||||||||||||||||||||    
T  5622067 gccaaatagcacccttagatgagatcattaaattgaaggaaaaatattgttttcgtattttactggatgagagca 5622141  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 5621412 - 5621466
Alignment:
Q  74 ggatgagagagtccactgggtattacataatggtctttatctttctagaagcaca 128  Q
    ||||||| |||||||||||| | |||| ||||| |||||||||||||||||||||    
T  5621412 ggatgagggagtccactggggaatacagaatggcctttatctttctagaagcaca 5621466  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 31915311 - 31915370
Alignment:
Q  411 gagttcttcagaggtggaggagg----tgatgcaggagggttttattagtaattcagtag 466  Q
    |||||||||||||||||||||||    ||||||| ||||||||||||||||||| |||||    
T  31915311 gagttcttcagaggtggaggaggagactgatgcatgagggttttattagtaatttagtag 31915370  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 5621029 - 5621073
Alignment:
Q  2 tactcttatgggctttccaccatgttaagtgatattcctgctttc 46  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||    
T  5621029 tactcttatggactttccaccatgttcagtgctattcctgctttc 5621073  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 13441954 - 13441896
Alignment:
Q  409 tcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaattcagtag 466  Q
    |||| |||||||||||||||||||  |||||||| |||||||| ||||||||| |||||    
T  13441954 tcgaattcttcagaggtggaggagactgatgcagaagggttttgttagtaatttagtag 13441896  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 466
Target Start/End: Complemental strand, 50857783 - 50857751
Alignment:
Q  434 tgatgcaggagggttttattagtaattcagtag 466  Q
    ||||||||||||||||||||||||||| |||||    
T  50857783 tgatgcaggagggttttattagtaatttagtag 50857751  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 1217527 - 1217467
Alignment:
Q  407 ggtcgagttcttcagaggtggaggagg-tgatgcaggagggttttattagtaattcagtag 466  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  1217527 ggtcgagttcttcaaaggtggaggagactgatgcaggagggttttattagtaattcagtag 1217467  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 409 - 466
Target Start/End: Original strand, 4303181 - 4303239
Alignment:
Q  409 tcgagttcttcagaggtggaggagg-tgatgcaggagggttttattagtaattcagtag 466  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||    
T  4303181 tcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaatttagtag 4303239  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 13883050 - 13882990
Alignment:
Q  407 ggtcgagttcttcagaggtggaggagg-tgatgcaggagggttttattagtaattcagtag 466  Q
    |||||||||||| ||||||||| |||  ||||||||||||||||||||||||||| |||||    
T  13883050 ggtcgagttctttagaggtggacgagactgatgcaggagggttttattagtaatttagtag 13882990  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 8915631 - 8915588
Alignment:
Q  292 agagcaccccaatatatgtaaagccacggttggtatccataact 335  Q
    |||||||||||||||||||||||||||  ||||||||| |||||    
T  8915631 agagcaccccaatatatgtaaagccacaattggtatccttaact 8915588  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 29175572 - 29175605
Alignment:
Q  433 gtgatgcaggagggttttattagtaattcagtag 466  Q
    |||||||||||||||||||||||||||| |||||    
T  29175572 gtgatgcaggagggttttattagtaatttagtag 29175605  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 365918 - 365858
Alignment:
Q  407 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaattcagtag 466  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||| |||||    
T  365918 ggtcgagttcttcagaggtggaggagattgatgcaggaggattttattagtaatttagtag 365858  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 3064106 - 3064046
Alignment:
Q  407 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaattcagtag 466  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| |||||    
T  3064106 ggtcgagttcttcagaggtggaggagactgatgcaggagggttttgttagtaatttagtag 3064046  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 21423512 - 21423440
Alignment:
Q  225 caaatatcacctttagatgagattattaaatttaaagaaaaatgctgttttcgtattttactggatgagagca 297  Q
    |||||| |||| |||||||| || |||||||| || |||||||   | |||||||||||||||||||||||||    
T  21423512 caaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagca 21423440  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21424520 - 21424476
Alignment:
Q  1 atactcttatgggctttccaccatgttaagtgatattcctgcttt 45  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||    
T  21424520 atactcttatggactttccaccatgttcagtgctattcctgcttt 21424476  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 21424191 - 21424146
Alignment:
Q  82 gagtccactgggtattacataatggtctttatctttctagaagcac 127  Q
    |||||||||||| | |||| ||||| ||||||||||||||||||||    
T  21424191 gagtccactggggaatacagaatggcctttatctttctagaagcac 21424146  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 53012777 - 53012810
Alignment:
Q  433 gtgatgcaggagggttttattagtaattcagtag 466  Q
    |||||||||||||||||||||||||||| |||||    
T  53012777 gtgatgcaggagggttttattagtaatttagtag 53012810  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 466
Target Start/End: Complemental strand, 43304297 - 43304265
Alignment:
Q  434 tgatgcaggagggttttattagtaattcagtag 466  Q
    ||||||||||||||||||||||||||| |||||    
T  43304297 tgatgcaggagggttttattagtaatttagtag 43304265  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 466
Target Start/End: Complemental strand, 43307011 - 43306979
Alignment:
Q  434 tgatgcaggagggttttattagtaattcagtag 466  Q
    ||||||||||||||||||||||||||| |||||    
T  43307011 tgatgcaggagggttttattagtaatttagtag 43306979  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 409 - 466
Target Start/End: Original strand, 31636059 - 31636117
Alignment:
Q  409 tcgagttcttcagaggtggaggagg-tgatgcaggagggttttattagtaattcagtag 466  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||    
T  31636059 tcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaatttagtag 31636117  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 407 - 460
Target Start/End: Original strand, 35681976 - 35682030
Alignment:
Q  407 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaatt 460  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  35681976 ggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatt 35682030  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 27952692 - 27952632
Alignment:
Q  407 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaattcagtag 466  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||| |||||    
T  27952692 ggtcgagttcttcagaggtggaggagactgatgtaggagggttttattaataatttagtag 27952632  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 22011154 - 22011200
Alignment:
Q  407 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttat 452  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  22011154 ggtcgagttctttagaggtggaggagagtgatgcaggagggttttat 22011200  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 466
Target Start/End: Complemental strand, 22512415 - 22512355
Alignment:
Q  407 ggtcgagttcttcagaggtggaggagg-tgatgcaggagggttttattagtaattcagtag 466  Q
    |||||||||||| |||||||||||||  ||||||||||| ||||||||||||||| |||||    
T  22512415 ggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaatttagtag 22512355  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 460
Target Start/End: Original strand, 26377794 - 26377848
Alignment:
Q  407 ggtcgagttcttcagaggtggaggag-gtgatgcaggagggttttattagtaatt 460  Q
    |||||||||||||| |||||||||||  ||||| ||||||||||| |||||||||    
T  26377794 ggtcgagttcttcaaaggtggaggagactgatgtaggagggttttcttagtaatt 26377848  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 24730820 - 24730853
Alignment:
Q  433 gtgatgcaggagggttttattagtaattcagtag 466  Q
    |||||||||||||||||||||||||||| |||||    
T  24730820 gtgatgcaggagggttttattagtaatttagtag 24730853  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 30634726 - 30634654
Alignment:
Q  225 caaatatcacctttagatgagattattaaatttaaagaaaaatgctgttttcgtattttactggatgagagca 297  Q
    |||||| |||| |||||||| || |||||||| || |||||||   | |||||||||||||||||||||||||    
T  30634726 caaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagca 30634654  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30635719 - 30635675
Alignment:
Q  1 atactcttatgggctttccaccatgttaagtgatattcctgcttt 45  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||    
T  30635719 atactcttatggactttccaccatgttcagtgctattcctgcttt 30635675  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 30635390 - 30635345
Alignment:
Q  82 gagtccactgggtattacataatggtctttatctttctagaagcac 127  Q
    |||||||||||| | |||| ||||| ||||||||||||||||||||    
T  30635390 gagtccactggggaatacagaatggcctttatctttctagaagcac 30635345  T

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