View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_18 (Length: 572)
Name: NF21553_low_18
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 25 - 561
Target Start/End: Original strand, 2490266 - 2490800
Alignment:
| Q |
25 |
gtggtggggcgaggggcacataaaaaatcaaaatctgcaatatattgttttgatggcatatttgtgtgtacacaacaacaatcagaataccctgaaattc |
124 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490266 |
gtggtggggcgaggggcacataaaaaatcaa--tttgcaatatattgttttgatggcatatttgtgtgtacacaacaacaatcagaataccctgaaattc |
2490363 |
T |
|
| Q |
125 |
aatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctaccgtctgcagagaacagagaaaatatattgag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2490364 |
catagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctaccgtccgcagagaacagagaaaatatattgag |
2490463 |
T |
|
| Q |
225 |
gacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagtgatctgaaggtttttctc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490464 |
gacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagtgatctgaaggtttttctc |
2490563 |
T |
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| Q |
325 |
tattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctgatgtcttaatgcattttccatttt |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490564 |
tattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctgatgtcttaatgcattttccatttt |
2490663 |
T |
|
| Q |
425 |
cattaattgttaaatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagagatacaaaaggattcggtaacttggcaa |
524 |
Q |
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| T |
2490664 |
cattaattgttaaatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagagatacaaaaggattcggtaacttggcaa |
2490763 |
T |
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| Q |
525 |
tttctctaaagatttactataatcctattatcctatg |
561 |
Q |
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| T |
2490764 |
tttctctaaagatttactataatcctattatcctatg |
2490800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 41589494 - 41589433
Alignment:
| Q |
437 |
aatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagaga |
498 |
Q |
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| T |
41589494 |
aatgcagaacttgtgcacaactgctgcttatcggccagttagagagttgattcagcaagaga |
41589433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 319
Target Start/End: Complemental strand, 41589925 - 41589784
Alignment:
| Q |
178 |
attatggttgggctaccgtctgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcg |
277 |
Q |
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| T |
41589925 |
attatggtaggactaccatctgttgagaacagggaaaagattttaaggactcttttgtcaaaagaaaaggtggacaaagaaattgattttaaggaacttg |
41589826 |
T |
|
| Q |
278 |
caactatgactgaaggatatagtggaagtgatctgaaggttt |
319 |
Q |
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| T |
41589825 |
cgaccatgacagacggatataccggaagtgatttaaaggttt |
41589784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
278 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
318 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||| |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
278 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
318 |
Q |
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|||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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