View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_low_19 (Length: 561)

Name: NF21553_low_19
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_low_19
NF21553_low_19
[»] chr1 (43 HSPs)
chr1 (218-397)||(49712450-49712629)
chr1 (1-157)||(51765588-51765750)
chr1 (19-175)||(13316151-13316307)
chr1 (436-558)||(49655037-49655162)
chr1 (33-159)||(8550599-8550725)
chr1 (45-175)||(20762907-20763037)
chr1 (24-146)||(3157083-3157205)
chr1 (30-159)||(49918574-49918703)
chr1 (24-159)||(37559679-37559816)
chr1 (31-159)||(833985-834112)
chr1 (24-159)||(31659456-31659591)
chr1 (24-159)||(44455378-44455513)
chr1 (33-159)||(10925449-10925575)
chr1 (41-175)||(9987439-9987579)
chr1 (31-159)||(40122016-40122143)
chr1 (41-155)||(20622052-20622168)
chr1 (41-175)||(21054195-21054335)
chr1 (24-159)||(37503377-37503507)
chr1 (41-155)||(40282614-40282731)
chr1 (33-159)||(13137795-13137921)
chr1 (33-148)||(28223248-28223362)
chr1 (32-159)||(50166995-50167121)
chr1 (31-157)||(50169032-50169157)
chr1 (31-151)||(196733-196852)
chr1 (24-159)||(28220041-28220176)
chr1 (500-558)||(49712626-49712684)
chr1 (31-159)||(23555086-23555213)
chr1 (31-159)||(28265374-28265501)
chr1 (95-159)||(45644173-45644237)
chr1 (24-151)||(1833727-1833853)
chr1 (31-159)||(3846936-3847066)
chr1 (41-154)||(9036655-9036770)
chr1 (104-159)||(13659166-13659221)
chr1 (104-157)||(3189642-3189695)
chr1 (104-157)||(3198459-3198512)
chr1 (104-157)||(3207298-3207351)
chr1 (104-159)||(30476261-30476317)
chr1 (176-211)||(49712083-49712118)
chr1 (31-77)||(41361136-41361182)
chr1 (24-73)||(3189549-3189598)
chr1 (24-73)||(3198366-3198415)
chr1 (24-73)||(3207205-3207254)
chr1 (106-134)||(15820596-15820624)
[»] chr2 (31 HSPs)
chr2 (1-175)||(32289757-32289937)
chr2 (1-176)||(4484127-4484307)
chr2 (19-176)||(4502932-4503088)
chr2 (19-176)||(36205463-36205620)
chr2 (1-151)||(30833537-30833693)
chr2 (19-175)||(45099967-45100122)
chr2 (19-156)||(5723074-5723211)
chr2 (30-159)||(36987890-36988019)
chr2 (24-159)||(17057184-17057319)
chr2 (24-159)||(17085167-17085302)
chr2 (24-159)||(6594819-6594954)
chr2 (24-159)||(38312458-38312593)
chr2 (31-159)||(723562-723689)
chr2 (31-159)||(14633643-14633770)
chr2 (31-159)||(34139588-34139715)
chr2 (33-159)||(42362573-42362698)
chr2 (19-155)||(6266908-6267043)
chr2 (24-159)||(24885804-24885938)
chr2 (31-133)||(2838171-2838272)
chr2 (31-133)||(11067526-11067627)
chr2 (24-158)||(14202240-14202373)
chr2 (33-159)||(2334233-2334358)
chr2 (31-159)||(33162269-33162397)
chr2 (95-175)||(36773847-36773926)
chr2 (106-159)||(11690787-11690841)
chr2 (31-76)||(1345688-1345733)
chr2 (31-133)||(39285060-39285161)
chr2 (31-74)||(11690723-11690766)
chr2 (94-132)||(12123434-12123472)
chr2 (33-151)||(29868096-29868213)
chr2 (24-73)||(36317914-36317963)
[»] chr5 (32 HSPs)
chr5 (1-175)||(26178075-26178255)
chr5 (1-157)||(16409668-16409830)
chr5 (19-175)||(30182801-30182957)
chr5 (1-167)||(26170955-26171127)
chr5 (44-175)||(18441441-18441571)
chr5 (19-175)||(9789021-9789175)
chr5 (19-156)||(36073861-36073998)
chr5 (19-151)||(13343273-13343405)
chr5 (30-159)||(30682737-30682867)
chr5 (24-150)||(39468373-39468499)
chr5 (19-176)||(25412973-25413130)
chr5 (31-159)||(42428245-42428373)
chr5 (24-176)||(16649634-16649784)
chr5 (31-159)||(42426050-42426178)
chr5 (24-159)||(5887250-5887384)
chr5 (31-158)||(8565764-8565893)
chr5 (33-151)||(13488428-13488545)
chr5 (33-159)||(33831906-33832031)
chr5 (24-159)||(28750470-28750605)
chr5 (41-175)||(29720601-29720743)
chr5 (24-159)||(13239970-13240104)
chr5 (33-135)||(42927120-42927221)
chr5 (41-176)||(29722761-29722904)
chr5 (31-159)||(31183199-31183326)
chr5 (31-159)||(538246-538374)
chr5 (41-154)||(22536108-22536221)
chr5 (104-159)||(534056-534112)
chr5 (95-151)||(3075573-3075629)
chr5 (104-149)||(19806660-19806705)
chr5 (41-154)||(29750973-29751090)
chr5 (106-151)||(32637123-32637168)
chr5 (33-79)||(32637051-32637097)
[»] chr8 (33 HSPs)
chr8 (1-175)||(2627928-2628108)
chr8 (19-175)||(19945158-19945314)
chr8 (23-175)||(31218474-31218625)
chr8 (19-175)||(17982866-17983021)
chr8 (19-175)||(44304068-44304224)
chr8 (31-176)||(30143565-30143709)
chr8 (19-156)||(34254149-34254286)
chr8 (19-156)||(34256325-34256462)
chr8 (31-175)||(1746018-1746162)
chr8 (30-177)||(15213010-15213157)
chr8 (24-159)||(4731876-4732011)
chr8 (25-157)||(27811497-27811631)
chr8 (24-159)||(41366433-41366567)
chr8 (24-157)||(42498413-42498546)
chr8 (24-175)||(4733924-4734075)
chr8 (33-159)||(33352377-33352503)
chr8 (24-159)||(6599187-6599318)
chr8 (24-159)||(6674640-6674771)
chr8 (33-159)||(18105891-18106016)
chr8 (95-176)||(5689556-5689636)
chr8 (41-154)||(25690193-25690308)
chr8 (94-159)||(12702446-12702511)
chr8 (31-176)||(40321301-40321443)
chr8 (32-135)||(10015301-10015403)
chr8 (31-77)||(1292365-1292411)
chr8 (24-74)||(4743118-4743168)
chr8 (31-159)||(43036648-43036776)
chr8 (104-151)||(3303494-3303541)
chr8 (33-175)||(1345176-1345316)
chr8 (41-133)||(3439741-3439833)
chr8 (94-151)||(4743051-4743108)
chr8 (31-77)||(19491599-19491645)
chr8 (33-77)||(4162692-4162736)
[»] scaffold0491 (2 HSPs)
scaffold0491 (1-157)||(10976-11138)
scaffold0491 (19-157)||(8550-8688)
[»] chr3 (41 HSPs)
chr3 (19-175)||(5260122-5260278)
chr3 (19-175)||(5257943-5258099)
chr3 (19-175)||(9635923-9636079)
chr3 (1-157)||(23199954-23200115)
chr3 (1-175)||(801284-801463)
chr3 (24-159)||(7762484-7762619)
chr3 (41-157)||(7779818-7779934)
chr3 (19-175)||(9634621-9634776)
chr3 (30-158)||(40735606-40735734)
chr3 (24-175)||(9581501-9581652)
chr3 (24-177)||(7764683-7764836)
chr3 (24-175)||(19683687-19683838)
chr3 (30-151)||(37408683-37408804)
chr3 (24-159)||(22834822-22834956)
chr3 (19-157)||(23197761-23197892)
chr3 (30-160)||(40734721-40734851)
chr3 (31-159)||(29811093-29811222)
chr3 (31-159)||(29813286-29813415)
chr3 (32-159)||(51399040-51399167)
chr3 (31-151)||(761070-761189)
chr3 (39-157)||(45095396-45095514)
chr3 (30-159)||(5236272-5236401)
chr3 (33-156)||(29682584-29682706)
chr3 (41-151)||(54635362-54635475)
chr3 (33-151)||(23391736-23391853)
chr3 (33-159)||(44700299-44700424)
chr3 (41-154)||(6716738-6716854)
chr3 (31-159)||(9666285-9666413)
chr3 (95-151)||(29196213-29196269)
chr3 (104-159)||(39153179-39153235)
chr3 (31-135)||(21350850-21350950)
chr3 (43-154)||(45283227-45283340)
chr3 (104-159)||(16499312-16499367)
chr3 (104-151)||(37406987-37407034)
chr3 (94-159)||(27305534-27305597)
chr3 (104-157)||(2074900-2074952)
chr3 (106-159)||(31314740-31314793)
chr3 (31-77)||(39153261-39153307)
chr3 (106-151)||(23410155-23410200)
chr3 (33-70)||(32891327-32891364)
chr3 (104-133)||(32891388-32891417)
[»] chr6 (29 HSPs)
chr6 (33-175)||(2171326-2171468)
chr6 (19-175)||(16452127-16452283)
chr6 (1-176)||(3072551-3072735)
chr6 (19-175)||(5408869-5409025)
chr6 (19-175)||(5413194-5413350)
chr6 (33-175)||(30834333-30834475)
chr6 (32-148)||(9182857-9182973)
chr6 (41-155)||(6097266-6097380)
chr6 (30-160)||(28137225-28137354)
chr6 (1-154)||(27648052-27648205)
chr6 (19-156)||(31404493-31404630)
chr6 (24-159)||(26954106-26954240)
chr6 (20-175)||(5406002-5406154)
chr6 (20-175)||(5410327-5410479)
chr6 (86-155)||(412368-412438)
chr6 (24-148)||(33160177-33160300)
chr6 (41-154)||(16555109-16555223)
chr6 (41-154)||(16578332-16578446)
chr6 (41-154)||(16616934-16617048)
chr6 (41-154)||(16631665-16631779)
chr6 (41-154)||(16653352-16653466)
chr6 (31-133)||(16569245-16569347)
chr6 (24-77)||(33211086-33211139)
chr6 (95-159)||(3038742-3038806)
chr6 (31-70)||(14521585-14521624)
chr6 (32-73)||(3038828-3038869)
chr6 (115-176)||(22963507-22963568)
chr6 (115-176)||(23824825-23824886)
chr6 (104-140)||(9182824-9182860)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-175)||(434747-434903)
[»] chr7 (37 HSPs)
chr7 (19-175)||(35854129-35854285)
chr7 (1-157)||(39731560-39731723)
chr7 (19-151)||(48409020-48409152)
chr7 (19-151)||(4178986-4179118)
chr7 (19-175)||(29991266-29991422)
chr7 (19-175)||(25766757-25766912)
chr7 (24-159)||(25616073-25616208)
chr7 (33-159)||(23555268-23555395)
chr7 (24-159)||(48489649-48489784)
chr7 (24-159)||(18126864-18127000)
chr7 (24-159)||(27348035-27348170)
chr7 (1-175)||(43503947-43504130)
chr7 (24-159)||(43864462-43864598)
chr7 (31-159)||(41648829-41648956)
chr7 (24-151)||(47675960-47676086)
chr7 (24-175)||(48491794-48491944)
chr7 (33-159)||(495803-495928)
chr7 (42-157)||(24790240-24790355)
chr7 (24-151)||(4586379-4586506)
chr7 (31-176)||(26417541-26417686)
chr7 (24-159)||(31732783-31732919)
chr7 (31-151)||(41317262-41317381)
chr7 (1-154)||(20344089-20344250)
chr7 (33-159)||(19502406-19502532)
chr7 (32-151)||(47673768-47673886)
chr7 (24-176)||(1113871-1114022)
chr7 (31-159)||(14069648-14069776)
chr7 (31-159)||(14379676-14379804)
chr7 (31-159)||(8153563-8153690)
chr7 (106-159)||(38671040-38671093)
chr7 (95-159)||(36146227-36146291)
chr7 (31-151)||(31105224-31105339)
chr7 (30-73)||(31519115-31519158)
chr7 (24-73)||(30024657-30024706)
chr7 (31-73)||(24525407-24525449)
chr7 (104-133)||(23344263-23344292)
chr7 (33-77)||(23564962-23565006)
[»] chr4 (29 HSPs)
chr4 (19-151)||(13992114-13992246)
chr4 (33-175)||(48143275-48143417)
chr4 (19-178)||(31495096-31495260)
chr4 (24-175)||(5369881-5370032)
chr4 (24-159)||(56178451-56178586)
chr4 (24-158)||(34570230-34570364)
chr4 (24-159)||(37740843-37740979)
chr4 (24-159)||(47038231-47038365)
chr4 (24-159)||(52082478-52082613)
chr4 (30-159)||(54199723-54199852)
chr4 (24-159)||(52095177-52095312)
chr4 (25-159)||(48893458-48893591)
chr4 (30-149)||(9927284-9927403)
chr4 (93-175)||(29999628-29999710)
chr4 (31-159)||(5872043-5872168)
chr4 (31-159)||(26175451-26175579)
chr4 (31-159)||(46147210-46147338)
chr4 (31-159)||(52467172-52467301)
chr4 (24-159)||(12743743-12743875)
chr4 (25-151)||(31474366-31474491)
chr4 (31-84)||(5429904-5429957)
chr4 (95-159)||(45687002-45687066)
chr4 (24-159)||(12739368-12739500)
chr4 (24-175)||(29254712-29254861)
chr4 (33-176)||(36463195-36463336)
chr4 (25-133)||(4588174-4588278)
chr4 (33-133)||(6542028-6542124)
chr4 (107-159)||(5207666-5207717)
chr4 (33-73)||(36994746-36994786)
[»] scaffold0286 (1 HSPs)
scaffold0286 (37-175)||(11795-11935)
[»] scaffold1519 (1 HSPs)
scaffold1519 (19-175)||(1129-1285)
[»] scaffold0016 (1 HSPs)
scaffold0016 (23-157)||(114820-114955)
[»] scaffold0066 (1 HSPs)
scaffold0066 (24-148)||(20241-20365)
[»] scaffold0006 (1 HSPs)
scaffold0006 (104-159)||(148927-148982)
[»] scaffold1668 (1 HSPs)
scaffold1668 (24-151)||(1325-1452)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 218 - 397
Target Start/End: Original strand, 49712450 - 49712629
Alignment:
Q  218 gtggaagtaaatttccccaagtagacaatgattgcaacatccaaccaatgaacataatcatacttattacttgcaccctttccatttgtaatgccattgc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  49712450 gtggaagtaaatttccccaagtagacaatgattgcaacatccaaccactgaacataatcatacttattgtttgcaccctttccattagtaatgccattgc 49712549  T
Q  318 ttaatgttctagcttttcattttcacatcattagtattctcagccatctccaataccctccgtctagaaccaggatgaac 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49712550 ttaatgttctagcttttcattttcacatcattagtattctcagccatctccaataccctccgtctagaaccaggatgaac 49712629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 51765588 - 51765750
Alignment:
Q  1 tcttccctctccttttatcttgtgttt------tatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    |||||||||||||||||||||||| ||      | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||    
T  51765588 tcttccctctccttttatcttgtgcttgtggtttgtgcttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcactca 51765687  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 157  Q
    |||  |||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  51765688 cttaattagtggttactactttcctttgctccacacatcatatttcgtattggtgtggttttg 51765750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 13316307 - 13316151
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| || ||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| || ||||||||||||    
T  13316307 cttgtggtttgtgtttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattgattactactttcc 13316208  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||  || || ||||||||||| |||||||| |||||| |||||||    
T  13316207 tttgctccacacattatatttcgtattggtgtgattttgagaccggaattcacaaca 13316151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 436 - 558
Target Start/End: Original strand, 49655037 - 49655162
Alignment:
Q  436 tcccctaatttattcatacatcatccttttttattttcttg---ccacaaccactgtatgctctatagaaccaaaatttgaagcttgtgaagccaaaaca 532  Q
    |||| |||||||||||||||||| |||||||||| |||||    ||||||||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  49655037 tcccttaatttattcatacatcacccttttttatcttcttcttaccacaaccactgtatgctctatagaacaaaaatttgtagattgtgaagccaaaaca 49655136  T
Q  533 tgtggcaaccaaagtataatctaccc 558  Q
    ||||||||||||||||||| ||||||    
T  49655137 tgtggcaaccaaagtataagctaccc 49655162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 8550725 - 8550599
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || |||||||||||||||||||||||||||||    
T  8550725 ttttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacat 8550626  T
Q  133 cttactttgtattggtgtggttttgag 159  Q
    | || |||||||||||||| |||||||    
T  8550625 catagtttgtattggtgtgattttgag 8550599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 20762907 - 20763037
Alignment:
Q  45 ttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactttgtat 144  Q
    |||||| |||||||||||||| |||||||||||||||||| ||| |  ||||||| || |||||| ||||||||||||||||||||||| || |||||||    
T  20762907 ttcctagattagatctaggtgctgttattgttgattattgcttgaattcactttgatattggttaatactttcctttgctccacacatcatagtttgtat 20763006  T
Q  145 tggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||| |||||||| |||||| |||||||    
T  20763007 tggtgtgattttgagaccggaattcacaaca 20763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 3157083 - 3157205
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||    
T  3157083 gttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgc 3157182  T
Q  124 tccacacatcttactttgtattg 146  Q
    |||||||||| || |||||||||    
T  3157183 tccacacatcatagtttgtattg 3157205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 49918574 - 49918703
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    ||||||||| |||| |||||| ||||||| |||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||    
T  49918574 tgcttttcattttgattcctagattagatataggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccaca 49918673  T
Q  130 catcttactttgtattggtgtggttttgag 159  Q
    |||| || |||||||||||||| |||||||    
T  49918674 catcatagtttgtattggtgtgattttgag 49918703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 37559816 - 37559679
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaatt-agatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttg 122  Q
    ||||| |||||||||||||| |||||| ||| ||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||||||    
T  37559816 gttttgtgcttttcactttgattcctagatttagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttg 37559717  T
Q  123 ctccacacatcttactttgtattggtgtg-gttttgag 159  Q
    ||||| ||||| || ||| |||||||||| ||||||||    
T  37559716 ctccagacatcatagtttatattggtgtgagttttgag 37559679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 834112 - 833985
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| |||| | ||||||||| |||||||||||||||| |||||| |||     |||||| || |||||||||||||||||||||||||||    
T  834112 gcttttcactttgattcccagattagatcttggtgttgttattgttg-ttattgcttgtgtttactttgatattggttactactttcctttgctccacac 834014  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    ||| || |||||||||||||| |||||||    
T  834013 atcatagtttgtattggtgtgattttgag 833985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 31659456 - 31659591
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||||||| |||    || |||| || ||||||||||||| |||| |    
T  31659456 gttttgtgctttttactttgattcctagattagatcaaggtgttgttattgttgattattgcttgtgttcattttgatattggttactacttttcttttc 31659555  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || ||| |||||||||| |||||||    
T  31659556 tccacacatcatattttatattggtgtgattttgag 31659591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 44455378 - 44455513
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| || ||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||| ||||| |||| |    
T  44455378 gttttgtgtttttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggttaccacttttcttttc 44455477  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||| ||| || |||||||||||||| |||||||    
T  44455478 tccacatatcatagtttgtattggtgtgattttgag 44455513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 10925449 - 10925575
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||| ||||| || ||| ||||||||||||||||||||||||||||||||| |||    ||||||| || || |||||||||||||||||||||||||     
T  10925449 ttttccctttgattactagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattgattactactttcctttgctccacacaa 10925548  T
Q  133 cttactttgtattggtgtggttttgag 159  Q
    | || ||||||||| |||| |||||||    
T  10925549 catagtttgtattgttgtgattttgag 10925575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 9987439 - 9987579
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatcttactt 139  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||||| || |||||||| ||| |||||||||||||||||| || ||    
T  9987439 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacactttgattggtggttaccactctcctttgctccacacatcatattt 9987537  T
Q  140 t--gtattggtgtggt----tttgagatcggaatacacaaca 175  Q
    |  |||||||||||||    |||||||||||||| |||||||    
T  9987538 ttcgtattggtgtggttcgatttgagatcggaattcacaaca 9987579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 40122143 - 40122016
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||| || ||| |||    ||||| | || ||||||||||||||||||||||||| |    
T  40122143 gcttttcactttgattactaaattagatctaggtgttgttattattg-ttgttgcttgtgttcacttagatattggttactactttcctttgctccacgc 40122045  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    ||| || |||||||||||||| |||||||    
T  40122044 atcatagtttgtattggtgtgattttgag 40122016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 20622168 - 20622052
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgttag-tggttactactttcctttgctccacacatcttac 137  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| |||  |||||| | |||||||||||||||||||||||||||||| |||    
T  20622168 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacacactttgtttggtggttactactttcctttgctccacacatcatac 20622070  T
Q  138 tttgtattggtgtggttt 155  Q
    || |||  ||||||||||    
T  20622069 ttggtacaggtgtggttt 20622052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 21054195 - 21054335
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttag-tggttactactttcctttgctccacacatcttact- 138  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||| ||| | ||||||| ||| |||||||||||||||||| || |     
T  21054195 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacacttagtttggtggttaccactctcctttgctccacacatcatattt 21054293  T
Q  139 -ttgtattggtgtggt----tttgagatcggaatacacaaca 175  Q
     |||||||||||||||    |||||||||||||| |||||||    
T  21054294 cttgtattggtgtggttcgatttgagatcggaattcacaaca 21054335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 37503507 - 37503377
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||  |||||| ||||||||||||||||| ||||||||||||||| |||    ||||||| ||     | |||||||||||| |    
T  37503507 gttttgtgcttttcactttaattcctagattagatctaggtgttgatattgttgattattgcttgtgttcactttgata-----ttctactttcctttac 37503413  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || |||||||||||||| |||||||    
T  37503412 tccacacatcatagtttgtattggtgtgattttgag 37503377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 40282614 - 40282731
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgtta--gtggttactactttcctttgctccacacatctta 136  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| |||  ||||||   |||||||| ||| |||||||||||||||||| ||    
T  40282614 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacacactttgttttggtggttaccactctcctttgctccacacatcata 40282712  T
Q  137 ctttgtattggtgtggttt 155  Q
     |||| |||||||||||||    
T  40282713 gtttgcattggtgtggttt 40282731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 13137921 - 13137795
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||     ||||||  | |||||||||||||||||||||||||||||    
T  13137921 ttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgaaattggttactactttcctttgctccacacat 13137823  T
Q  133 cttactttgtattggtgtg-gttttgag 159  Q
    | || |||||||||||||| ||||||||    
T  13137822 cataatttgtattggtgtgagttttgag 13137795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 28223362 - 28223248
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||| ||||||||||||||    
T  28223362 ttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcgtttgctccacacat 28223264  T
Q  133 cttactttgtattggt 148  Q
    | || |||||||||||    
T  28223263 catagtttgtattggt 28223248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 50167121 - 50166995
Alignment:
Q  32 cttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacaca 131  Q
    |||||||||||| || ||| |||||||||||||||||||||| ||| || ||  |||     |||||| || ||||||||||||||||||||||||||||    
T  50167121 cttttcactttgattactagattagatctaggtgttgttattattg-ttgtttcttgtgtttactttgatattggttactactttcctttgctccacaca 50167023  T
Q  132 tcttactttgtattggtgtggttttgag 159  Q
    || || ||||| |||||||| |||||||    
T  50167022 tcatagtttgttttggtgtgattttgag 50166995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 50169157 - 50169032
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| ||||||| |||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||| |||||| |||||    
T  50169157 gcttttcactttgattactagattagatataggtgttgttattattg-ttgttgtttgtgttcactttgatattggttactactttcatttgcttcacac 50169059  T
Q  131 atcttactttgtattggtgtggttttg 157  Q
    ||| || |||||||||||||| |||||    
T  50169058 atcatagtttgtattggtgtgattttg 50169032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 196852 - 196733
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    |||| |||||||| || ||| ||||||| |||||||||||||| ||| || ||| |||    ||||||| || ||||||||| |||||||||||||||||    
T  196852 gcttctcactttgattactagattagatgtaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactattttcctttgctccacac 196754  T
Q  131 atcttactttgtattggtgtg 151  Q
    ||| || ||||||||||||||    
T  196753 atcataatttgtattggtgtg 196733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 28220176 - 28220041
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||  || ||||||||| ||| |||||     
T  28220176 gttttgtgcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgtttgtgttcactttaatattggttactaattttctttgt 28220078  T
Q  124 tccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||| || |||||||||||||| ||||||||    
T  28220077 tccacacatcatagtttgtattggtgtgagttttgag 28220041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 500 - 558
Target Start/End: Original strand, 49712626 - 49712684
Alignment:
Q  500 gaaccaaaatttgaagcttgtgaagccaaaacatgtggcaaccaaagtataatctaccc 558  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||    
T  49712626 gaacaaaaatttgtagattgtgaagccaaaacatgtggcaaccaaagtataagctaccc 49712684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 23555213 - 23555086
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| || ||| |||     ||||||  | || |||||||||| |||||||||||||    
T  23555213 gcttttcactatgattcctaaattagatctaggtgttgttattgttg-ttgttgcttgtgtttactttgacattgattactacttttctttgctccacac 23555115  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    ||| |  ||| |||||||| | |||||||    
T  23555114 atcattgtttctattggtgcgattttgag 23555086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 28265501 - 28265374
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    |||||| |||||| || ||| ||||||||||| |||||||||| ||| || ||| |||    ||||||| || ||| ||||| |||||||| ||||||||    
T  28265501 gctttttactttgattactagattagatctagatgttgttattattg-ttgttgcttgtgttcactttgatattggctactattttcctttactccacac 28265403  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    ||| || |||||||||||||| |||||||    
T  28265402 atcatagtttgtattggtgtgattttgag 28265374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 45644237 - 45644173
Alignment:
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    ||||| || |||||||||||||||||||||||||||||| || |||||||| ||||| |||||||    
T  45644237 ctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtgattttgag 45644173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 1833727 - 1833853
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||     ||||||  | ||||||| |||||||||| |    
T  1833727 gttttgtgcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgaaattggttacgactttcctttac 1833825  T
Q  124 tccacacatcttactttgtattggtgtg 151  Q
    |||||| ||| || ||||||||||||||    
T  1833826 tccacagatcatagtttgtattggtgtg 1833853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 3847066 - 3846936
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgat--tattgattgcacccactttgttagtggttactactttcctttgctccac 128  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||  |  | ||| |||    ||||||| || |||||||||||||||||| ||||||    
T  3847066 gcttttcactttgattactatattagatctaggtgttgttattattattgttgttgcttgtgttcactttgatattggttactactttcctttactccac 3846967  T
Q  129 acatcttactttgtattggtgtggttttgag 159  Q
    ||||| || |||||||| || || |||||||    
T  3846966 acatcatagtttgtattagtatgattttgag 3846936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 9036655 - 9036770
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacc--cactttgttag-tggttactactttcctttgctccacacatcttac 137  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| ||||||   ||||||||| | ||||||| ||| ||||| |||||||||||| | |    
T  9036655 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacaaacactttgtttggtggttaccactctccttagctccacacatcatcc 9036753  T
Q  138 tttgtattggtgtggtt 154  Q
    |||| ||||||||||||    
T  9036754 tttgcattggtgtggtt 9036770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 13659221 - 13659166
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||||||||||||||||||||||  || ||||||||| |||| |||||||    
T  13659221 tggttactactttcctttgctccacacattatagtttgtattgatgtgattttgag 13659166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 3189642 - 3189695
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 157  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||||| |||||    
T  3189642 tggttactactttcctttgctccagacatcatagtttatattggtgtgattttg 3189695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 3198459 - 3198512
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 157  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||||| |||||    
T  3198459 tggttactactttcctttgctccagacatcatagtttatattggtgtgattttg 3198512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 3207298 - 3207351
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 157  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||||| |||||    
T  3207298 tggttactactttcctttgctccagacatcatagtttatattggtgtgattttg 3207351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 30476317 - 30476261
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||||||||||| ||||||||||  || |||||||||||||| ||||||||    
T  30476317 tggttactactttcctttactccacacattatagtttgtattggtgtgagttttgag 30476261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 49712083 - 49712118
Alignment:
Q  176 tgtcaggaaacaatatagaaagtgaattttaaattt 211  Q
    ||||||||||||||||||| ||||||||||||||||    
T  49712083 tgtcaggaaacaatatagatagtgaattttaaattt 49712118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 41361136 - 41361182
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttg 77  Q
    |||||| |||||| |||||| ||||||| ||||||||||||||||||    
T  41361136 gctttttactttgattcctagattagatataggtgttgttattgttg 41361182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 3189549 - 3189598
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttatt 73  Q
    ||||| |||||||||||||| || ||| |||||||||||||||| |||||    
T  3189549 gttttgtgcttttcactttgattactagattagatctaggtgttattatt 3189598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 3198366 - 3198415
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttatt 73  Q
    ||||| |||||||||||||| || ||| |||||||||||||||| |||||    
T  3198366 gttttgtgcttttcactttgattactagattagatctaggtgttattatt 3198415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 3207205 - 3207254
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttatt 73  Q
    ||||| |||||||||||||| || ||| |||||||||||||||| |||||    
T  3207205 gttttgtgcttttcactttgattactagattagatctaggtgttattatt 3207254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 15820596 - 15820624
Alignment:
Q  106 gttactactttcctttgctccacacatct 134  Q
    |||||||||||||||||||||||||||||    
T  15820596 gttactactttcctttgctccacacatct 15820624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 32289757 - 32289937
Alignment:
Q  1 tcttccctctccttttatcttg------tgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    ||||||||||||||||||||||      |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  32289757 tcttccctctccttttatcttgtgcttgtgttttatgcttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcaccca 32289856  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32289857 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaattcacaaca 32289937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4484307 - 4484127
Alignment:
Q  1 tcttccctctccttttatcttgtgttt------tatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    |||||||||||||||||||||||| ||      | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||    
T  4484307 tcttccctctccttttatcttgtgcttgtggtttttgcttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcactca 4484208  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    |||||||| |||||||||||||||||||||||||||||| || || |||||||||| | ||||||| |||||| ||||||||    
T  4484207 ctttgttattggttactactttcctttgctccacacatcatatttcgtattggtgt-gatttgagaccggaattcacaacat 4484127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 4503088 - 4502932
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| |||||||||||||||    
T  4503088 cttgtgttttgtgcttttcactttgtttcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttactactttcc 4502989  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    ||| ||||||||||  || ||||||||||||| | ||||||| |||||| ||||||||    
T  4502988 tttactccacacattatagtttgtattggtgt-gatttgagaccggaattcacaacat 4502932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 36205620 - 36205463
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    |||||||||| |||||||||||||||    
T  36205620 cttgtggtttctgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgttattggttactactttcc 36205521  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    ||||||||||||||| || |||||||| ||||| |||||||| |||||| ||||||||    
T  36205520 tttgctccacacatcatagtttgtattagtgtgattttgagaccggaattcacaacat 36205463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 30833537 - 30833693
Alignment:
Q  1 tcttccctctccttttatcttgtgttt------tatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    |||||||||||||||||||||||| ||      | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||    
T  30833537 tcttccctctccttttatcttgtgcttgtggtttgtgcttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcactca 30833636  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtg 151  Q
    | |  ||| |||||||||||||||||||||||||||||| || || |||||||||||    
T  30833637 cataattaatggttactactttcctttgctccacacatcatatttcgtattggtgtg 30833693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 45099967 - 45100122
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||    
T  45099967 cttgtgatttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcc 45100066  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || || |||||||||| | ||||||| |||||| |||||||    
T  45100067 tttgctccacacatcataattcgtattggtgt-gatttgagaccggaattcacaaca 45100122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 5723211 - 5723074
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| ||||||||  |||| |||||| ||||||||||||||||||||||||||||||||| |||  | ||||||| || ||||||||||||| |    
T  5723211 cttgtggtttgtgcttttctttttgattcctagattagatctaggtgttgttattgttgattattgtttgtgctcactttgatattggttactactttac 5723112  T
Q  119 tttgctccacacatcttactttgtattggtgtggtttt 156  Q
    ||||||||||||||| || |||||||||||||| ||||    
T  5723111 tttgctccacacatcatagtttgtattggtgtgatttt 5723074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 36988019 - 36987890
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||     ||||||  | ||||||||||||||||||||||||||    
T  36988019 tgcttttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgtttactttgaaattggttactactttcctttgctccaca 36987920  T
Q  130 catcttactttgtattggtgtggttttgag 159  Q
    |||| || |||||||||||||| |||||||    
T  36987919 catcatagtttgtattggtgtgattttgag 36987890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 17057319 - 17057184
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||  |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||    
T  17057319 gttttgtgcttttcactttaattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgc 17057220  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    || ||||||| || |||||||||||||| |||||||    
T  17057219 tctacacatcatattttgtattggtgtgattttgag 17057184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 17085302 - 17085167
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||  |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||    
T  17085302 gttttgtgcttttcactttaattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgc 17085203  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    || ||||||| || |||||||||||||| |||||||    
T  17085202 tctacacatcatattttgtattggtgtgattttgag 17085167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 6594954 - 6594819
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||| |||||||||||||||||  |||    ||||||| || ||||||||||||| ||||||    
T  6594954 gttttgtgcttttcactttgatttctagattagatctaggtgctgttattgttgattattacttgtgttcactttgatattggttactactttactttgc 6594855  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || |||||||||||||| |||||||    
T  6594854 tccacacatcatagtttgtattggtgtgattttgag 6594819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 38312458 - 38312593
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||| ||| |||    ||||||| || ||||||||||||||||||||    
T  38312458 gttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattgttgcttgtgttcactttgatattggttactactttcctttgc 38312557  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| |  ||| |||||||||| |||||||    
T  38312558 tccacacatcattgtttatattggtgtgattttgag 38312593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 723689 - 723562
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||| || |||||||    ||||||| || |||||||||||||||||||||||||||    
T  723689 gcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgattgtgttcactttgatattggttactactttcctttgctccacac 723591  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    ||| || |||||||||||||| |||||||    
T  723590 atcatagtttgtattggtgtgattttgag 723562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 14633770 - 14633643
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || ||||||||||||||||||||| |||||    
T  14633770 gcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgcttcacac 14633672  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    ||| || |||||||||||||| |||||||    
T  14633671 atcatagtttgtattggtgtgattttgag 14633643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 34139715 - 34139588
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| ||||||||||||| |||||||| ||| || ||| |||    ||||||| || |||||||||||||||||||||||||||    
T  34139715 gcttttcactttgattactagattagatctaggtcttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgctccacac 34139617  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    ||| || |||||||||||||| |||||||    
T  34139616 atcatagtttgtattggtgtgattttgag 34139588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 42362573 - 42362698
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| |  |||||||||||||||||||||||||||||    
T  42362573 ttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgagttcactttgattttggttactactttcctttgctccacacat 42362671  T
Q  133 cttactttgtattggtgtggttttgag 159  Q
    | || |||||||||||||| |||||||    
T  42362672 catagtttgtattggtgtgattttgag 42362698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 6266908 - 6267043
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttag-tggttactactttc 117  Q
    ||||||| || || |||||||||  ||||||| ||||||||||||||||||| ||||||||| ||| || ||| ||||||||| | ||||||| ||| ||    
T  6266908 cttgtgtattgtgtttttcacttc-tttcctagattagatctaggtgttgtt-ttgttgatttttgcttacacacactttgtttggtggttaccactctc 6267005  T
Q  118 ctttgctccacacatcttactttgtattggtgtggttt 155  Q
    |||||||||||||||| || |||  |||||||||||||    
T  6267006 ctttgctccacacatcatagtttacattggtgtggttt 6267043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 24885804 - 24885938
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||  ||| || ||  |||    ||||||| || ||||||||| ||||||||||    
T  24885804 gttttgtgcttttcactttgattactagattagatctaggtgttgttatcattg-ttgtttcttgtgttcactttgatattggttactattttcctttgc 24885902  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    | |||||||| || |||||||||||||| |||||||    
T  24885903 tacacacatcatagtttgtattggtgtgattttgag 24885938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 2838171 - 2838272
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||||| || ||| |||     |||||| ||||||||||||||||||||| ||||||||    
T  2838171 gcttttcactttgattcctagattatatctaggtgttgttattgttg-ttgttgtttgtgtttactttgatagtggttactactttcctttactccacac 2838269  T
Q  131 atc 133  Q
    |||    
T  2838270 atc 2838272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 11067526 - 11067627
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||||||||||||||||    
T  11067526 gcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgctccacac 11067624  T
Q  131 atc 133  Q
    |||    
T  11067625 atc 11067627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 14202373 - 14202240
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    |||||| ||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| ||||   ||||||| || || ||||||||||||||| |    
T  14202373 gttttaagcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgcgttcactttgatattgattactactttcctttac 14202275  T
Q  124 tccacacatcttactttgtattggtgtggttttga 158  Q
    |||||| ||| || ||||| ||||| || ||||||    
T  14202274 tccacatatcatagtttgtgttggtatgattttga 14202240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 2334358 - 2334233
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || | | |||||||||||||||||||||| ||| || ||| |||     ||||||  | ||||||||||||||||||||| |||||||    
T  2334358 ttttcactttgattaccagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgaaattggttactactttcctttgcttcacacat 2334260  T
Q  133 cttactttgtattggtgtggttttgag 159  Q
    | || |||||||||||||| |||||||    
T  2334259 catagtttgtattggtgtgattttgag 2334233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 33162397 - 33162269
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca-ctttgttagtggttactactttcctttgctccaca 129  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||       ||||| || ||||||||||||||||||||||||||    
T  33162397 gcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgttgtttgctttgatattggttactactttcctttgctccaca 33162299  T
Q  130 catcttactttgtattggtgtggttttgag 159  Q
    |||| || ||||||||| |||| |||||||    
T  33162298 catcatagtttgtattgatgtgattttgag 33162269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 36773847 - 36773926
Alignment:
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||| || |||||||||||||| ||||||||||||||| || |||||||||||||| |||||| ||| |||| |||||||    
T  36773847 ctttgatattggttactactttcatttgctccacacatcatagtttgtattggtgtgattttga-atccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 11690787 - 11690841
Alignment:
Q  106 gttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  11690787 gttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgag 11690841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 1345688 - 1345733
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgtt 76  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||    
T  1345688 gcttttcactttgattcctagattagatctaggtgttgttattgtt 1345733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 39285060 - 39285161
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||     ||||||  | ||||||||||||| |||||||||||||    
T  39285060 gcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgaaattggttactacttttctttgctccacac 39285158  T
Q  131 atc 133  Q
    |||    
T  39285159 atc 39285161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 11690723 - 11690766
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattg 74  Q
    ||||||||||||  |||||| |||||||||||||||||||||||    
T  11690723 gcttttcactttaattcctagattagatctaggtgttgttattg 11690766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 12123472 - 12123434
Alignment:
Q  94 actttgttagtggttactactttcctttgctccacacat 132  Q
    |||||| || |||||||||||||||||||||||||||||    
T  12123472 actttgatattggttactactttcctttgctccacacat 12123434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 29868096 - 29868213
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||     |||||   | || |||||||||| |||||||||||||||    
T  29868096 ttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttaaaattgattactacttttctttgctccacacat 29868194  T
Q  133 cttactttgtattggtgtg 151  Q
    | || ||||||||| ||||    
T  29868195 catagtttgtattgctgtg 29868213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 36317963 - 36317914
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttatt 73  Q
    ||||| |||||||||||||| || ||| |||| |||||||||||||||||    
T  36317963 gttttgtgcttttcactttgattactagattaaatctaggtgttgttatt 36317914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 1e-64; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 26178075 - 26178255
Alignment:
Q  1 tcttccctctccttttatcttg------tgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    ||||||||||||||||||||||      ||||||||||||||||||||| |||||| |||||||||||||||||||||  |||||||||| |||||| ||    
T  26178075 tcttccctctccttttatcttgtgcttgtgttttatgcttttcactttgattcctagattagatctaggtgttgttatcattgattattgcttgcacaca 26178174  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26178175 ctttgttagtggttactactttcctttgctccacacatcttacttcgtattggtgtggttttgagatcggaattcacaaca 26178255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 16409668 - 16409830
Alignment:
Q  1 tcttccctctccttttatcttg------tgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    ||||||||||||||||||||||      |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  16409668 tcttccctctccttttatcttgtgcttgtgttttatgcttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcaccca 16409767  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 157  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  16409768 ctttgttagtggttactactttcctttgctccacacatcatactttgtattggtgtgattttg 16409830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 30182801 - 30182957
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||    
T  30182801 cttgtgttttgtgcttttcactttgtttcctagattagatctaggtgttgttattgttgattattgtttgcattcactttgttattggttactactttcc 30182900  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || ||||| |||||||| |||||||| |||||| |||||||    
T  30182901 tttgctccacacatcatagtttgttttggtgtgattttgagaccggaattcacaaca 30182957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 26170955 - 26171127
Alignment:
Q  1 tcttccctctccttttatcttg------tgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    ||||||||||||||||||||||      |||||||||||||||| |||| |||||| |||||||||||||||||||||  | |||||||| |||||| ||    
T  26170955 tcttccctctccttttatcttgtgcttgtgttttatgcttttcattttgattcctagattagatctaggtgttgttatcatcgattattgcttgcacaca 26171054  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaat 167  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  26171055 ctttgttagtgcttactactttcctttgctccacacatcttacttcgtattggtgtggttttgagattggaat 26171127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 18441571 - 18441441
Alignment:
Q  44 tttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttactttgta 143  Q
    ||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18441571 tttcctagattagatctaggtgctgtt-ttgttgattattgcttgcacacactttgttggtggttactactttcctttgctccacacatcttactttgta 18441473  T
Q  144 ttggtgtggttttgagatcggaatacacaaca 175  Q
    |||||||||||||||||||||||| |||||||    
T  18441472 ttggtgtggttttgagatcggaattcacaaca 18441441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 9789175 - 9789021
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    ||||||| || || |||||||||  ||||||| |||||||||||||| |||| ||||||||| ||| |||||| ||||||||| ||||||||||||||||    
T  9789175 cttgtgtattgtgtttttcacttc-tttcctagattagatctaggtgctgtt-ttgttgatttttgcttgcacacactttgttggtggttactactttcc 9789078  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  9789077 tttgctccacacatcatactttgtattggtgtggttttgagatcggaattcacaaca 9789021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 36073998 - 36073861
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| |||||| ||||||||    
T  36073998 cttgtgatttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttattactttcc 36073899  T
Q  119 tttgctccacacatcttactttgtattggtgtggtttt 156  Q
    ||||||||||||||| || |||||||||||||||||||    
T  36073898 tttgctccacacatcatagtttgtattggtgtggtttt 36073861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 13343273 - 13343405
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||    
T  13343273 cttgtggtttgtgcttttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgcattcactttgttattggttactactttcc 13343372  T
Q  119 tttgctccacacatcttactttgtattggtgtg 151  Q
    ||||||||||||||| || || ||||| |||||    
T  13343373 tttgctccacacatcatagttcgtattagtgtg 13343405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 30682867 - 30682737
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||    
T  30682867 tgcttttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccaca 30682768  T
Q  130 catcttactttgtattggtgtg-gttttgag 159  Q
    |||| || |||||||||||||| ||||||||    
T  30682767 catcatagtttgtattggtgtgagttttgag 30682737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 39468499 - 39468373
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||    
T  39468499 gttttgtgcttttcactttgatttctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggttactactttcctttgc 39468400  T
Q  124 tccacacatcttactttgtattggtgt 150  Q
    |||||||||| || |||||||||||||    
T  39468399 tccacacatcatagtttgtattggtgt 39468373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 25412973 - 25413130
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||| ||||| |||||| ||||||| |||||| |||||||||||||||||| |||  | ||||| | || || |||||| |||||    
T  25412973 cttgtggtttgtgcttttctctttgattcctagattagatataggtgctgttattgttgattattgcttgtgctcacttggatattgattactaatttcc 25413072  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    ||||||||||||||| || || ||||||||||| |||||| | |||||| ||||||||    
T  25413073 tttgctccacacatcatagttcgtattggtgtgattttgaaaccggaattcacaacat 25413130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 42428373 - 42428245
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| || ||| ||| |||    ||||||| || |||||||||||||||||||||||||||    
T  42428373 gcttttcactttgattactagattagatctaggtgttgttattatt-attgttgcttgtgttcactttgatattggttactactttcctttgctccacac 42428275  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| || |||||||||||||| ||||||||    
T  42428274 atcatagtttgtattggtgtgagttttgag 42428245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 16649784 - 16649634
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||| ||| | | |  |||    ||||||| | |||||||||||||||||||||    
T  16649784 gttttgtgcttttcactttgattactagattagatctaggtgttgttattattgct-actacttgtgttcactttgattgtggttactactttcctttgc 16649686  T
Q  124 tccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    |||||||||| || ||||||||||| || ||||||| || |||| ||||||||    
T  16649685 tccacacatcatagtttgtattggtatgattttgagttc-gaattcacaacat 16649634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 42426178 - 42426050
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| |||||  ||| |||    ||||||| || |||||||||||||| ||||||||||||    
T  42426178 gcttttcactttgattactagattagatctaggtgttgttattattgatg-ttgcttgtgttcactttgatattggttactactttcttttgctccacac 42426080  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| || |||||||| ||||| ||||||||    
T  42426079 atcatagtttgtatttgtgtgagttttgag 42426050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 5887384 - 5887250
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    |||||| | |||||| |||| || ||| ||||||| |||||||||||||| ||| || ||| |||    ||||||| || ||||||||||||||||||||    
T  5887384 gttttaagtttttcattttgattactagattagatttaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgc 5887286  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||| ||| || |||||||||||||| |||||||    
T  5887285 tccacatatcatagtttgtattggtgtgattttgag 5887250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 8565893 - 8565764
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgat--tattgattgcacccactttgttagtggttactactttcctttgctccac 128  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||  |  | ||| |||    |||||||||| |||||||||||||||||||||||||    
T  8565893 gcttttcactttgattactagattagatctaggtgttgttattattattgttgttgcttgtgttcactttgttattggttactactttcctttgctccac 8565794  T
Q  129 acatcttactttgtattggtgtggttttga 158  Q
    ||||| || ||| |||| ||||| ||||||    
T  8565793 acatcatagtttatattagtgtgattttga 8565764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 13488428 - 13488545
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||| | ||||||||    |||||||  | |||||| ||||||||||| ||||||||||    
T  13488428 ttttcactttgattactagattagatctaggtgttgttattattgct-attgattgtgttcactttgaaattggttattactttcctttactccacacat 13488526  T
Q  133 cttactttgtattggtgtg 151  Q
    | || ||||||||||||||    
T  13488527 catattttgtattggtgtg 13488545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 33831906 - 33832031
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| |||||| ||||||| |||||| || |||||||| |||||| |||    ||||||| |  |||||||||||||||||||||||||||||    
T  33831906 ttttcactttgattcctagattagatttaggtgctgctattgttg-ttattgcttgtgttcactttgattttggttactactttcctttgctccacacat 33832004  T
Q  133 cttactttgtattggtgtggttttgag 159  Q
    | || |||||||| ||||  |||||||    
T  33832005 catagtttgtatttgtgtaattttgag 33832031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 28750605 - 28750470
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||| | || ||| |||||||||||||||||||||| ||| || ||| |||     |||||   | ||||||||||||||||||||    
T  28750605 gttttgtgcttttcacttggattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttaaaattggttactactttcctttgc 28750507  T
Q  124 tccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||| || |||||||||||||| ||||||||    
T  28750506 tccacacatcataatttgtattggtgtgagttttgag 28750470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 29720601 - 29720743
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattg--cacccactttg-ttagtggttactactttcctttgctccacacatcttac 137  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||  ||| ||||||| || |||||||| ||| |||||||||||||||| | ||     
T  29720601 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgtacacacactttgtttggtggttaccactctcctttgctccacacaacatat 29720699  T
Q  138 t--ttgtattggtgtggtt----ttgagatcggaatacacaaca 175  Q
    |  ||||||||||||||||    ||||||||||||| |||||||    
T  29720700 ttcttgtattggtgtggttcgacttgagatcggaattcacaaca 29720743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 13239970 - 13240104
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| || ||||||||||| || ||| |||||||||||||||||||||||||| || ||| |||     |||||   | |||||||||||||||||| |    
T  13239970 gttttgtgtttttcactttgattactagattagatctaggtgttgttattgttg-ttgttgcttgtgtttactttaaaattggttactactttcctttac 13240068  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || |||||||| ||||| |||||||    
T  13240069 tccacacatcatagtttgtattagtgtgattttgag 13240104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 42927120 - 42927221
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| || ||| |||     |||||| || | ||| |||||||||||||||||||||||    
T  42927120 ttttcactttgattcctagattagatctaggtgttgttattgttg-ttgttgcttgtgtttactttgatattagttgctactttcctttgctccacacat 42927218  T
Q  133 ctt 135  Q
    |||    
T  42927219 ctt 42927221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 29722761 - 29722904
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattg--cacccactttg-ttagtggttactactttcctttgctccacacatcttac 137  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||  ||| ||||||| || |||||||| ||| | |||||||||||||| | ||     
T  29722761 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgtacacacactttgtttggtggttaccactctactttgctccacacaccatat 29722859  T
Q  138 t--ttgtattggtgtggtt----ttgagatcggaatacacaacat 176  Q
    |  ||||||||||||||||    ||||||||||||| ||||||||    
T  29722860 ttcttgtattggtgtggttcgacttgagatcggaattcacaacat 29722904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 31183199 - 31183326
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| ||||||| |||||||||||||| ||  || ||| |||    | ||||| || | |||||||||||||||||||||||||    
T  31183199 gcttttcactttgattactagattagatataggtgttgttattattt-ttgttgcttgtgttccctttgatattagttactactttcctttgctccacac 31183297  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    ||| |  |||||||||||||| |||||||    
T  31183298 atcatggtttgtattggtgtgattttgag 31183326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 538246 - 538374
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| ||||||||||| |||||||||| ||| || ||| |||     ||||||  | |||||| ||||||||||||||||||||    
T  538246 gcttttcactttgattactagattagatctagatgttgttattattg-ttgttgcttgtgtttactttgaaattggttattactttcctttgctccacac 538344  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| || ||| |||||||||| ||||||||    
T  538345 atcatagtttatattggtgtgagttttgag 538374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 22536221 - 22536108
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg--ttagtggttactactttcctttgctccacacatcttact 138  Q
    |||||||||| |||||||||||||||| ||  |||||||| ||| |||||  |||||||  || ||||||||  || ||| | |||||||||||| | ||    
T  22536221 ttgtttcctagattagatctaggtgttttt--tgttgattgttgcttgcatacactttgctttggtggttaccgctctccgtcgctccacacatcattct 22536124  T
Q  139 ttgtattggtgtggtt 154  Q
    ||||||||||||||||    
T  22536123 ttgtattggtgtggtt 22536108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 534056 - 534112
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||| ||||||||    
T  534056 tggttactactttcctttgctccacacatcatagtttctattggtgtgagttttgag 534112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 3075629 - 3075573
Alignment:
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtg 151  Q
    ||||| || |||||| ||||||||||||||||||||||| || ||||||||||||||    
T  3075629 ctttgatattggttattactttcctttgctccacacatcatagtttgtattggtgtg 3075573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 19806660 - 19806705
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtg 149  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||    
T  19806660 tggttactactttcctttgccccacacatcatagtttgtattggtg 19806705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 29751090 - 29750973
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac---tttgttagtggttactactttcctttgctccacacatcttac 137  Q
    |||||| ||| |||| ||||||||| |||| ||||||||||||| |||||| |||   ||  || |||||||| ||| |||||||||||||||||| ||     
T  29751090 ttgttttctagattatatctaggtggtgtt-ttgttgattattgcttgcacacacacattgtttggtggttaccactctcctttgctccacacatcatat 29750992  T
Q  138 t--ttgtattggtgtggtt 154  Q
    |  ||||||||||||||||    
T  29750991 ttcttgtattggtgtggtt 29750973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 32637123 - 32637168
Alignment:
Q  106 gttactactttcctttgctccacacatcttactttgtattggtgtg 151  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||    
T  32637123 gttactactttcctttactccacacatcatagtttgtattggtgtg 32637168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 32637051 - 32637097
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgat 79  Q
    ||||||||||| || ||| |||||||||||||||||||||| |||||    
T  32637051 ttttcactttgattactagattagatctaggtgttgttattattgat 32637097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 6e-63; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 2627928 - 2628108
Alignment:
Q  1 tcttccctctccttttatcttgtg------ttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattatt-gattgcaccc 93  Q
    ||||||||||||||||||||||||      ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || | ||||||||    
T  2627928 tcttccctctccttttatcttgtgcttgtgttttatgcttttcactt-gtttcctagattagatctaggtgttgttattgttgattttttgcttgcaccc 2628026  T
Q  94 actttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  2628027 actttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggtttcgagatcggaattcacaaca 2628108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 19945314 - 19945158
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||| | |||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| |||||||||||||||    
T  19945314 cttgtggtttgtgcttttcacttcgattcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttactactttcc 19945215  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    |||||||||||||||  | |||||||||||||| |||||||| |||||| |||||||    
T  19945214 tttgctccacacatcaaagtttgtattggtgtgattttgagaccggaattcacaaca 19945158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 31218474 - 31218625
Alignment:
Q  23 tgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttg 122  Q
    |||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| ||||| |||||||||||||    
T  31218474 tgttttgtgcttttcactttgtttcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttgctactttcctttg 31218573  T
Q  123 ctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||| || ||| ||||||||| | ||||||| |||||| |||||||    
T  31218574 ctccacacatcatagtttatattggtgt-gatttgagaccggaattcacaaca 31218625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 17982866 - 17983021
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    |||||||||| |||||||||| ||||    
T  17982866 cttgtggtttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgttattggttactacgttcc 17982965  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || ||||||||||||| | |||||||||||||| |||||||    
T  17982966 tttgctccacacatcatagtttgtattggtgt-gatttgagatcggaattcacaaca 17983021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 44304068 - 44304224
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |||  | ||||||  || |||||||||||||||    
T  44304068 cttgtggtttgtgcttttcactttgatttctagattagatctaggtgttgttattgttgattattgcttgtgctcactttaatattggttactactttcc 44304167  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || | |||||||||||| |||||||| |||||| |||||||    
T  44304168 tttgctccacacatcatagtatgtattggtgtgattttgagaacggaattcacaaca 44304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 30143565 - 30143709
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || |||||||||||||||||||||||||||    
T  30143565 gcttttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacac 30143664  T
Q  131 atcttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    ||| || |||||||||||||| ||||||| || |||| ||||||||    
T  30143665 atcatagtttgtattggtgtgattttgag-tctgaattcacaacat 30143709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 34254286 - 34254149
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||| ||||| |||||| |||||||||||||| |||||||||||||||||| |||  | ||||||| || |||||||||||||||    
T  34254286 cttgtggtttgtgcttttctctttgattcctagattagatctaggtgctgttattgttgattattgcttgtgctcactttgatattggttactactttcc 34254187  T
Q  119 tttgctccacacatcttactttgtattggtgtggtttt 156  Q
    ||||||||||||||| || |||||||||||||| ||||    
T  34254186 tttgctccacacatcatagtttgtattggtgtgttttt 34254149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 34256462 - 34256325
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||| ||||| |||||| |||||||||||||| |||||||||||||||||| |||  | ||||||  || |||||||||||||||    
T  34256462 cttgtggtttgtgcttttctctttgattcctagattagatctaggtgctgttattgttgattattgcttgtgctcactttaatattggttactactttcc 34256363  T
Q  119 tttgctccacacatcttactttgtattggtgtggtttt 156  Q
    ||||||||||||||| || |||||||||||||| ||||    
T  34256362 tttgctccacacatcatagtttgtattggtgtgttttt 34256325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 1746162 - 1746018
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    |||||| |||||| |||||| |||||||||||||| |||||||||||||||||| |||    |||||||||| |||||||||||||||||| ||||||||    
T  1746162 gcttttgactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgttattggttactactttcctttactccacac 1746063  T
Q  131 atcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||| || || ||||||||||| |||||||| || ||| |||||||    
T  1746062 atcatagttcgtattggtgtgattttgagaccgaaattcacaaca 1746018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 15213010 - 15213157
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    |||||||||||||| |||||| |||||||| ||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||    
T  15213010 tgcttttcactttgattcctagattagatcaaggtgctgttattgttgattattgtttgtgttcactttgatattggttactactttcctttgctccaca 15213109  T
Q  130 catcttactttgtattggtgtg-gttttgagatcggaatacacaacatg 177  Q
    |||| || |||||||||||||| |||||||| || |||| |||||||||    
T  15213110 catcatagtttgtattggtgtgagttttgag-tccgaattcacaacatg 15213157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 4731876 - 4732011
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| ||  |||||||||||||||||||    
T  4731876 gttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatatcggttactactttcctttgc 4731975  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| |  |||||||||||||| |||||||    
T  4731976 tccacacatcattgtttgtattggtgtgattttgag 4732011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 27811497 - 27811631
Alignment:
Q  25 ttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgct 124  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    ||||||| || |||||||||||||||||| ||    
T  27811497 ttttgtgcttttcactttgattcctaaattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttcct 27811596  T
Q  125 ccacacatc--ttactttgtattggtgtggttttg 157  Q
    |||||||||   || |||||||||||||| |||||    
T  27811597 ccacacatcatatagtttgtattggtgtgattttg 27811631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 41366567 - 41366433
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |||||| |||     |||||| || ||||||||||||||||||||    
T  41366567 gttttgtgcttttcactttgattcctatattagatctaggtgttgttattgttg-ttattgcttgtgtttactttgatattggttactactttcctttgc 41366469  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || |||||||||||||| |||||||    
T  41366468 tccacacatcatagtttgtattggtgtgattttgag 41366433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 42498413 - 42498546
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| || ||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||    ||||||| || ||||| ||||||||||||||    
T  42498413 gttttgtgtttttcactttgattcctagattagatctaggtgttgttattgttaattattgcttgtgttcactttgatattggttgctactttcctttgc 42498512  T
Q  124 tccacacatcttactttgtattggtgtggttttg 157  Q
    |||||||||| || |||||||||||||| |||||    
T  42498513 tccacacatcatattttgtattggtgtgattttg 42498546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 4733924 - 4734075
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||    || |||| || ||||||||||||||||||||    
T  4733924 gttttgtgcttttcattttgtttcctacatttgatctaggtgttgttattgttgattattgcttgtgttcattttgatattggttactactttcctttgc 4734023  T
Q  124 tccacacatc-ttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    |||||||||| ||  |||||||||||||  |||||| ||| |||| |||||||    
T  4734024 tccacacatcattggtttgtattggtgtaattttga-atccgaattcacaaca 4734075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 33352377 - 33352503
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || ||| ||||||| ||||||||||||||||||||||||| |||    ||||||| || |||||| ||||||||||||||||||| ||    
T  33352377 ttttcactttgatttctagattagatttaggtgttgttattgttgattattgcttgtgttcactttgatattggttattactttcctttgctccacatat 33352476  T
Q  133 cttactttgtattggtgtggttttgag 159  Q
    | || ||| |||||||||| |||||||    
T  33352477 cataatttatattggtgtgattttgag 33352503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 6599187 - 6599318
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||| |||    ||| |||    ||||||| || ||||||||||||||||||||    
T  6599187 gttttgtgcttttcactttgattactagattagatctaggtgttgttattattg----ttgtttgtgttcactttgatattggttactactttcctttgc 6599282  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    || ||||||| || |||||||||||||| |||||||    
T  6599283 tctacacatcatagtttgtattggtgtgattttgag 6599318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 6674640 - 6674771
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||| |||    ||| |||    ||||||| || ||||||||||||||||||||    
T  6674640 gttttgtgcttttcactttgattactagattagatctaggtgttgttattattg----ttgtttgtgttcactttgatattggttactactttcctttgc 6674735  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    || ||||||| || |||||||||||||| |||||||    
T  6674736 tctacacatcatagtttgtattggtgtgattttgag 6674771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 18106016 - 18105891
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||| |||||| |||     |||||  || |||||||||||||||||||||| ||||||    
T  18106016 ttttcactttgattcctagattagatctaggtgatgttattgttg-ttattgcttgtgtttactttaatattggttactactttcctttgctctacacat 18105918  T
Q  133 cttactttgtattggtgtggttttgag 159  Q
    | || |||||||| ||||| |||||||    
T  18105917 catagtttgtattagtgtgattttgag 18105891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 5689556 - 5689636
Alignment:
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    ||||| || |||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||| ||||||||    
T  5689556 ctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgag-tcggaattcacaacat 5689636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 25690193 - 25690308
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgttag-tggttactactttcctttgctccacacatcttac 137  Q
    |||||||||| |||||||||||||| |||| ||||||||| ||| |||||| |||  |||||| | ||||||| ||| |||||||||||||||||| | |    
T  25690193 ttgtttcctagattagatctaggtggtgtt-ttgttgattcttgcttgcacacacactttgtttggtggttaccactctcctttgctccacacatcattc 25690291  T
Q  138 tttgtattggtgtggtt 154  Q
    |||||||||||||||||    
T  25690292 tttgtattggtgtggtt 25690308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 12702511 - 12702446
Alignment:
Q  94 actttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||| || |||||||||||||||||||||||||||||| || ||||||||| |||| |||||||    
T  12702511 actttgatattggttactactttcctttgctccacacatcatagtttgtattgatgtgattttgag 12702446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 40321301 - 40321443
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||     |||||| || || || ||||||||||||||||||||     
T  40321301 gcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgatattgattgctactttcctttgctccacat 40321399  T
Q  131 atcttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    ||| || |||||||| ||||| ||||||| ||||||| ||||||||    
T  40321400 atcatagtttgtatt-gtgtgattttgag-tcggaattcacaacat 40321443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 10015301 - 10015403
Alignment:
Q  32 cttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacaca 131  Q
    |||||||||||| || ||||||||||||||||| |||||||| ||| || ||| |||    ||||||| || |||||| ||||||||| |||||||||||    
T  10015301 cttttcactttgattactaaattagatctaggtattgttattattg-tttttgcttgtgttcactttgatattggttattactttcctctgctccacaca 10015399  T
Q  132 tctt 135  Q
    ||||    
T  10015400 tctt 10015403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 1292411 - 1292365
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttg 77  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  1292411 gcttttcactttgattcctagattagatctaggtgttgttattgttg 1292365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 4743168 - 4743118
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattg 74  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  4743168 gttttgtgcttttcactttgattcctagattagatctaggtgttgttattg 4743118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 43036648 - 43036776
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||| |||| || ||| || ||| |||     ||||||  | |||||||||||||||||||||||||||    
T  43036648 gcttttcactttggttactagattagatctaggtggtgttgttattg-ttgttgcttgtgtttactttgaaattggttactactttcctttgctccacac 43036746  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| |  |||||||||||||| ||||||||    
T  43036747 atcattttttgtattggtgtgagttttgag 43036776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 3303541 - 3303494
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtg 151  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||||    
T  3303541 tggttaccactttcctttgctccacacatcatagtttgtattggtgtg 3303494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 1345316 - 1345176
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || ||| |||||||||||||||| ||||| ||| || ||| |||     |||||| || |||||||||||||||||||||||||| ||    
T  1345316 ttttcactttgattactagattagatctaggtgttattattattg-ttgttgtttgtgtttactttgatattggttactactttcctttgctccacagat 1345218  T
Q  133 cttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
      |  |||||||| ||||| |||||| ||| |||| |||||||    
T  1345217 tattgtttgtatttgtgtgattttga-atccgaattcacaaca 1345176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 3439741 - 3439833
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc 133  Q
    |||||||||| |||||||||||||| |||| ||||||||| ||| |||||| ||||||| || ||||||||  || ||| | ||||||||||||    
T  3439741 ttgtttcctagattagatctaggtggtgtt-ttgttgattgttgcttgcacacactttgtttggtggttaccgctctccgtcgctccacacatc 3439833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 4743108 - 4743051
Alignment:
Q  94 actttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtg 151  Q
    |||||| || ||||||| |||||||||||||||||||||  || ||||||||||||||    
T  4743108 actttggtattggttaccactttcctttgctccacacattatagtttgtattggtgtg 4743051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 19491645 - 19491599
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttg 77  Q
    |||||| |||||| |||||| ||||||| ||||||||||||||||||    
T  19491645 gctttttactttgattcctagattagatataggtgttgttattgttg 19491599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 4162692 - 4162736
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttg 77  Q
    ||||||||||| |||||| ||||||||||||| || |||||||||    
T  4162692 ttttcactttgattcctagattagatctaggttttattattgttg 4162736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 11138 - 10976
Alignment:
Q  1 tcttccctctccttttatcttgtgttt------tatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    |||||||||||||||||||||||| ||      | || |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  11138 tcttccctctccttttatcttgtgcttgtggtttgtgtttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcaccca 11039  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 157  Q
    ||| || | |||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  11038 cttagtcattggttactactttcctttgctccacatatcatactttgtattggtgtggttttg 10976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 8688 - 8550
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || | |||||||||||||||    
T  8688 cttgtggtttgtgcttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcacccacttagtcattggttactactttcc 8589  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttg 157  Q
    ||||||||||  ||| |||||||||||||||||||||||    
T  8588 tttgctccacgtatcatactttgtattggtgtggttttg 8550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 5260278 - 5260122
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||    
T  5260278 cttgtggtttgtgcttttcactttgattcctaaattagatctaggtgttgttattgttgattattgcttgcactcactttgttattggttactactttcc 5260179  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || || |||||||| ||  ||||||| | |||| |||||||    
T  5260178 tttgctccacacatcatagttcgtattggtttgactttgagaccagaattcacaaca 5260122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 5258099 - 5257943
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||  |||||||||| |||||||||||||||    
T  5258099 cttgtggtttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttactactttcc 5258000  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || || |||||||||||  ||||||| |||||| |||||||    
T  5257999 tttgctccacacatcatagttcgtattggtgtgactttgagaccggaattcacaaca 5257943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 9636079 - 9635923
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| |||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||    
T  9636079 cttgtgatttatgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcc 9635980  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || |||||||||||||| |||||||| |||||| |||||||    
T  9635979 tttgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 9635923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 23200115 - 23199954
Alignment:
Q  1 tcttccctctccttttatctt------gtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    |||||||||||||||||||||      ||| ||| || |||||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||| ||    
T  23200115 tcttccctctccttttatcttatgcttgtggtttgtgtttttcattttgtttcctagattagatctaggtgtt-ttattgttgattattgcttgcactca 23200017  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 157  Q
    |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  23200016 ctttgttattggttactactttcctttgctccacatatcatactttgtattggtgtggttttg 23199954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 801284 - 801463
Alignment:
Q  1 tcttccctctccttttatcttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttatt-gttgattattgattgcacccactttg 99  Q
    ||||||||||||||||||||||||| || || |||||   |||||||||| |||||||||||||| |||| || ||||||||||| |||||| ||||||     
T  801284 tcttccctctccttttatcttgtgtattgtgtttttccacttgtttcctagattagatctaggtgctgttttttgttgattattgcttgcacacacttta 801383  T
Q  100 ttagtggttactactttcctttgctccacacatcttactttgtattggtgtg----gttttgagatcggaatacacaaca 175  Q
    |||||||||||||||||||||||||||||||||| || || |||||||||||    |||||||||||||||| |||||||    
T  801384 ttagtggttactactttcctttgctccacacatcatatttcgtattggtgtgacacgttttgagatcggaattcacaaca 801463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 7762484 - 7762619
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||    ||||||| || ||||||||||||||||||||    
T  7762484 gttttgtgcttttcactttgattcctaaattagatctaggtgttgttattgttgattattacttgtgttcactttgatattggttactactttcctttgc 7762583  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || ||||||||||||| ||||||||    
T  7762584 tccacacatcatagtttgtattggtgtagttttgag 7762619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 7779934 - 7779818
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttacttt 140  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||     
T  7779934 ttgtttcctagattagatctaggtgctgtttttgttgattattgcttgcacacactttgttggtggttaccactctcctttgctccacacatcttacttc 7779835  T
Q  141 gtattggtgtggttttg 157  Q
    |||||||||||||||||    
T  7779834 gtattggtgtggttttg 7779818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 9634776 - 9634621
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| | |||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||    
T  9634776 cttgtgatctatgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcc 9634677  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||| ||| || |||||||||||||| |||||||| |||||| |||||||    
T  9634676 tttgctccaca-atcatagtttgtattggtgtgattttgagaccggaattcacaaca 9634621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 40735606 - 40735734
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||    
T  40735606 tgcttttcactttggttcctatattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggttactactttcctttgctccaca 40735705  T
Q  130 catcttactttgtattggtgtggttttga 158  Q
    |||| || |||||||||||||| ||||||    
T  40735706 catcataatttgtattggtgtgattttga 40735734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 9581501 - 9581652
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| ||| || |||||||||||||| |||||||||||||||||| |||  | ||||||| || ||||||||||||||||||||    
T  9581501 gttttgtgcttttcactttgattcatagattagatctaggtgctgttattgttgattattgcttgtgctcactttgatattggttactactttcctttgc 9581600  T
Q  124 tccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    | |||||||| || ||| |||||||||| |||||||  |||||| |||||||    
T  9581601 ttcacacatcatagtttatattggtgtgattttgagtccggaattcacaaca 9581652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 7764683 - 7764836
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||| | |||||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||||| |    
T  7764683 gttttgtgcttttcactttgattccaagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttac 7764782  T
Q  124 tccacacatcttactttgtattggtgtggttttgagatcggaatacacaacatg 177  Q
    | |||||||| || ||||||||||||| ||||||||  |||||| |||||||||    
T  7764783 ttcacacatcatagtttgtattggtgtagttttgagtccggaattcacaacatg 7764836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 19683838 - 19683687
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| || ||||||||||  |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||||||||||||||||||    
T  19683838 gttttgtgtttttcacttttattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgc 19683739  T
Q  124 tccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    |||| ||||| || ||||||||||||||  ||||||| |||||| |||||||    
T  19683738 tccaaacatcatagtttgtattggtgtgagtttgagaccggaattcacaaca 19683687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 37408683 - 37408804
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||  | ||||||  || ||||||||||||||||||||||||||    
T  37408683 tgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgctcactttaatattggttactactttcctttgctccaca 37408782  T
Q  130 catcttactttgtattggtgtg 151  Q
    |||| || ||||||||| ||||    
T  37408783 catcatattttgtattgatgtg 37408804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 22834956 - 22834822
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |||||   ||     |||||| || ||||||||||||||||||||    
T  22834956 gttttgtgcttttcactttgattcctagattagatctaggtgttgttattgttg-ttattacctgtgtttactttgatattggttactactttcctttgc 22834858  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || |||||||||||||| |||||||    
T  22834857 tccacacatcatagtttgtattggtgtgattttgag 22834822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 23197892 - 23197761
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| || |||||| ||||||||||| |||||||||| ||||| |||||||||||||||| ||||      ||| ||| |||||||||||||||    
T  23197892 cttgtggtttgtgtttttcattttgtttcctagattagatctatgtgtt-ttattgttgattattgcttgc------tttattattggttactactttcc 23197800  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttg 157  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  23197799 tttgctccacatatcatactttgtattggtgtggttttg 23197761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 40734721 - 40734851
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    |||||| ||||||| |||||| |||||||||||||| ||||||| || ||||||  |||    ||||||| || ||||||||||||||||||||||||||    
T  40734721 tgctttgcactttgattcctagattagatctaggtgctgttattttttattatttcttgtgttcactttgatattggttactactttcctttgctccaca 40734820  T
Q  130 catcttactttgtattggtgtggttttgaga 160  Q
    |||| || |||||||||||||| ||||||||    
T  40734821 catcatagtttgtattggtgtgattttgaga 40734851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 29811093 - 29811222
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    | |||||  | ||||||||||||||||||||||||||     
T  29811093 gcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttctctttgaaattggttactactttcctttgctccacaa 29811192  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| || |||||||||||||| ||||||||    
T  29811193 atcatattttgtattggtgtgagttttgag 29811222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 29813286 - 29813415
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| ||| || |||||||||||||| |||||||||||||||||| |||    ||||||| || | ||||||||||| |||||||||||||    
T  29813286 gcttttcactttgattcttagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattagttactacttttctttgctccacac 29813385  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| || |||||||||||||| ||||||||    
T  29813386 atcatagtttgtattggtgtgagttttgag 29813415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 51399040 - 51399167
Alignment:
Q  32 cttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacaca 131  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||||||||| | |  | ||||||| || || || |||||||||||||||||| |||    
T  51399040 cttttcactttgattcctagattagatctaggtgctgttattgttgattattgctagtgctcactttgatattgttttctactttcctttgctccataca 51399139  T
Q  132 tcttactttgtattggtgtggttttgag 159  Q
    || || ||||||||||| || |||||||    
T  51399140 tcatagtttgtattggtatgattttgag 51399167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 761070 - 761189
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| |||||| |||||||||||||| || |||||||| |||||| |||    ||||||| |  |||||||||||||||||||||||||||    
T  761070 gcttttcactttgattcctagattagatctaggtgctgctattgttg-ttattgcttgagttcactttgattttggttactactttcctttgctccacac 761168  T
Q  131 atcttactttgtattggtgtg 151  Q
    ||| || ||||||||||||||    
T  761169 atcatagtttgtattggtgtg 761189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 45095396 - 45095514
Alignment:
Q  39 ctttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttact 138  Q
    ||||| ||| || |||||||||| ||| |||||||||||||||||| |||  | ||||||| || |||||||||||||||||||||| ||||||| || |    
T  45095396 ctttgattcatagattagatctatgtgctgttattgttgattattgcttgtgctcactttgatattggttactactttcctttgctctacacatcatagt 45095495  T
Q  139 ttgtattggtgtggttttg 157  Q
    |||||||| |||| |||||    
T  45095496 ttgtattgatgtgattttg 45095514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 5236401 - 5236272
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    |||||||||||||| |||||| |||||||||||| | | |||||||||||||||| |||    ||||||| ||  | ||||||||||||| | |||||||    
T  5236401 tgcttttcactttgattcctagattagatctaggagctcttattgttgattattgcttgtgttcactttgatatcgattactactttcctgtactccaca 5236302  T
Q  130 catcttactttgtattggtgtggttttgag 159  Q
    |||| || |||||||||||||| |||||||    
T  5236301 catcatagtttgtattggtgtgattttgag 5236272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 29682584 - 29682706
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| ||||||  ||||||||||||| || |||||||| |||||| ||| |  ||||||  |  || ||||||||||||||||||||||||||    
T  29682584 ttttcactttgattcctaggttagatctaggtgctgctattgttg-ttattgcttgtattcactttaattttgattactactttcctttgctccacacat 29682682  T
Q  133 cttactttgtattggtgtggtttt 156  Q
    | || |||||||||||||| ||||    
T  29682683 catagtttgtattggtgtgatttt 29682706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 54635362 - 54635475
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccac--tttgttag-tggttactactttcctttgctccacacatc-tta 136  Q
    |||||||||| |||||||||||||| |||| ||||||||||||| |||||| |||  |||||| | ||||||| ||| |||||||||||||||||| |||    
T  54635362 ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacacactttgtttggtggttaccactctcctttgctccacacatcatta 54635460  T
Q  137 ctttgtattggtgtg 151  Q
     || |||||||||||    
T  54635461 tttagtattggtgtg 54635475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 23391853 - 23391736
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||| || ||  |||    ||||||| || |||||| ||||||||||| ||||||||||    
T  23391853 ttttcactttgattactagattagatctaggtgttgttattattg-ttgtttcttgtgttcactttgatattggttattactttccttttctccacacat 23391755  T
Q  133 cttactttgtattggtgtg 151  Q
    | || ||||||||||||||    
T  23391754 catagtttgtattggtgtg 23391736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 44700424 - 44700299
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||     |||||| || ||||||||||||| ||||||||||  |||    
T  44700424 ttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgatattggttactacttttctttgctccatgcat 44700326  T
Q  133 cttactttgtattggtgtggttttgag 159  Q
    | || |||||||||||||| |||||||    
T  44700325 catagtttgtattggtgtgattttgag 44700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 6716738 - 6716854
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattg--cacccactttg-ttagtggttactactttcctttgctccacacatcttac 137  Q
    |||||||||| |||||||||||||| |||| | ||||||||||| |||  ||| ||||||| || ||||||||  |||||| ||||||||||||||   |    
T  6716738 ttgtttcctagattagatctaggtggtgttttggttgattattgcttgcacacacactttgtttggtggttaccgctttccgttgctccacacatcactc 6716837  T
Q  138 tttgtattggtgtggtt 154  Q
    |||| ||||||||||||    
T  6716838 tttgcattggtgtggtt 6716854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 9666413 - 9666285
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgc-acccactttgttagtggttactactttcctttgctccaca 129  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||| |  ||| |||  |    ||||| || ||||||||||||||||||||||||||    
T  9666413 gcttttcactttgattactagattagatctaggtgttgttattattg-tagttgcttgttatttgctttgatattggttactactttcctttgctccaca 9666315  T
Q  130 catcttactttgtattggtgtggttttgag 159  Q
     ||| || |||||||||||||| |||||||    
T  9666314 gatcatagtttgtattggtgtgattttgag 9666285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 29196269 - 29196213
Alignment:
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtg 151  Q
    ||||| || |||||||||||||||||||||||||||||| || ||||||||||||||    
T  29196269 ctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtg 29196213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 39153235 - 39153179
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  39153235 tggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgag 39153179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 21350950 - 21350850
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||||    ||| |||     |||||| || ||||||||||||||||||||| |||||    
T  21350950 gcttttcactttgattcctagattagatctaagtgttgttattgttg----ttgtttgtgtttactttgatattggttactactttcctttgcttcacac 21350855  T
Q  131 atctt 135  Q
    |||||    
T  21350854 atctt 21350850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 45283227 - 45283340
Alignment:
Q  43 gtttcctaaattagatctaggtgttgttattgttgattattgattgcacc--cactttgttag-tggttactactttcctttgctccacacatcttactt 139  Q
    |||||||| |||||||||||||| |||| ||||||||||||| ||||||   ||||||||| | |||||||  || ||| | |||||||||||| | |||    
T  45283227 gtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacaaacactttgtttggtggttaccgctctccgtcgctccacacatcattctt 45283325  T
Q  140 tgtattggtgtggtt 154  Q
    |||||||||||||||    
T  45283326 tgtattggtgtggtt 45283340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 16499312 - 16499367
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||||||||||||||||||||||  || ||||||||| |||| |||||||    
T  16499312 tggttactactttcctttgctccacacattatagtttgtattgatgtgattttgag 16499367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 37406987 - 37407034
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtg 151  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||    
T  37406987 tggttactactttcctttgctccacacatcatattttgtagtggtgtg 37407034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 27305597 - 27305534
Alignment:
Q  94 actttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||| || |||||||||||||||||||||||||||||| || ||  |||||||||| |||||||    
T  27305597 actttgatattggttactactttcctttgctccacacatcatagtt--tattggtgtgattttgag 27305534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 2074952 - 2074900
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttg 157  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||| |||||    
T  2074952 tggttactactttcctttgctccacacatcatagttt-tattggtgtgattttg 2074900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 31314740 - 31314793
Alignment:
Q  106 gttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    |||| ||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  31314740 gttattactttcctttgctccatacatcatagtttgtattggtgtgattttgag 31314793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 39153307 - 39153261
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttg 77  Q
    ||||||||||||| || ||| |||||||||||||||||||||| |||    
T  39153307 gcttttcactttgattactagattagatctaggtgttgttattattg 39153261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 23410200 - 23410155
Alignment:
Q  106 gttactactttcctttgctccacacatcttactttgtattggtgtg 151  Q
    ||||||||||||||||| |||||||||| || ||||||||| ||||    
T  23410200 gttactactttcctttgatccacacatcatagtttgtattgatgtg 23410155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 32891327 - 32891364
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgtt 70  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  32891327 ttttcactttgattcctatattagatctaggtgttgtt 32891364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 133
Target Start/End: Original strand, 32891388 - 32891417
Alignment:
Q  104 tggttactactttcctttgctccacacatc 133  Q
    ||||||||||||||||||||||||||||||    
T  32891388 tggttactactttcctttgctccacacatc 32891417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 2171468 - 2171326
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  2171468 ttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgcacacactttgttagtggttactactttcctttgctccacacat 2171369  T
Q  133 cttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    | || || |||||||||||  ||||||| |||||| |||||||    
T  2171368 catagttcgtattggtgtgactttgagaccggaattcacaaca 2171326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 16452283 - 16452127
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||| |  |||||||||| |||||||||||||||    
T  16452283 cttgtggtttgtgcttttcactttgattcctagattagatctaggtgatgttattgttgattattgcttgtattcactttgttattggttactactttcc 16452184  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||| ||||||||||| || || ||||||||||| ||||||||||||||| |||||||    
T  16452183 tttactccacacatcatagttcgtattggtgtgattttgagatcggaattcacaaca 16452127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 3072735 - 3072551
Alignment:
Q  1 tcttccctctccttttatcttgtg------ttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    ||||||||||||||||||||||||      ||||||||||||||||| |||||||| |||||||||| ||| | || ||||||||||||| |||||| ||    
T  3072735 tcttccctctccttttatcttgtgcttgtgttttatgcttttcactt-gtttcctagattagatctatgtgctatttttgttgattattgcttgcacaca 3072637  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtg----gttttgagatcggaatacacaacat 176  Q
    ||||||||||||||||||||||||||||||||||||||| || || |||||||||||    | |||||||||||||| ||||||||    
T  3072636 ctttgttagtggttactactttcctttgctccacacatcatatttcgtattggtgtgacacgatttgagatcggaattcacaacat 3072551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 5409025 - 5408869
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |||  | ||||||| || |||||||||||||||    
T  5409025 cttgtggtttgtgcttttctctttgattcctagattagatctaggtgttgttattgttgattattgcttgtgctcactttgatattggttactactttcc 5408926  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || ||||||||||||||  |||||||  ||||| |||||||    
T  5408925 tttgctccacacatcatagtttgtattggtgtgactttgagactggaattcacaaca 5408869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 5413350 - 5413194
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |||  | ||||||| || |||||||||||||||    
T  5413350 cttgtggtttgtgcttttctctttgattcctagattagatctaggtgttgttattgttgattattgcttgtgctcactttgatattggttactactttcc 5413251  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || ||||||||||||||  |||||||  ||||| |||||||    
T  5413250 tttgctccacacatcatagtttgtattggtgtgactttgagactggaattcacaaca 5413194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 30834475 - 30834333
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| ||| || |||||||||||||| |||||||||||||||||| |||||  |||||||||| ||||||||| |||||||||||||||||||    
T  30834475 ttttcactttgattcatagattagatctaggtgctgttattgttgattattgcttgcattcactttgttattggttactattttcctttgctccacacat 30834376  T
Q  133 cttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    | || || ||||||||||| |||||||| || ||| |||||||    
T  30834375 catatttcgtattggtgtgattttgagaccgaaattcacaaca 30834333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 9182973 - 9182857
Alignment:
Q  32 cttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacaca 131  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || ||||||||||||||||||||||||||||    
T  9182973 cttttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacaca 9182874  T
Q  132 tcttactttgtattggt 148  Q
    || || |||||||||||    
T  9182873 tcatagtttgtattggt 9182857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 6097380 - 6097266
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatcttacttt 140  Q
    ||||| |||| |||||||| ||||| |||| ||||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||||| | ||||    
T  6097380 ttgttacctagattagatcaaggtgctgtttttgttgattatagcttgcacacactttgttagtggttactactttccgttgctccacacatcattcttt 6097281  T
Q  141 gtattggtgtggttt 155  Q
    | || ||||||||||    
T  6097280 gcatcggtgtggttt 6097266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 28137354 - 28137225
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||| | |||||| |||     |||||| || ||||||||||||||||||||||||||    
T  28137354 tgcttttcactttgattcctatattagatctatgtgttgttattgtcg-ttattgcttgtgtttactttgatattggttactactttcctttgctccaca 28137256  T
Q  130 catcttactttgtattggtgtggttttgaga 160  Q
    | || || |||||||||||||| ||||||||    
T  28137255 cgtcatagtttgtattggtgtgattttgaga 28137225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 27648052 - 27648205
Alignment:
Q  1 tcttccctctccttttatcttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattg--cacccacttt 98  Q
    ||||||||||||||||||||||||| ||  | || |||| |||||||||| |||||||||||||| |||| ||||||||||||| |||  ||| ||||||    
T  27648052 tcttccctctccttttatcttgtgtattgagtttctcac-ttgtttcctagattagatctaggtggtgtt-ttgttgattattgcttgcacacacacttt 27648149  T
Q  99 gtt-agtggttactactttcctttgctccacacatcttactttgtattggtgtggtt 154  Q
    |||  |||||||| ||| |||||||||||||||||| | | ||||||||||||||||    
T  27648150 gttcggtggttaccactctcctttgctccacacatcattc-ttgtattggtgtggtt 27648205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 31404630 - 31404493
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||| | ||||| |||||| |||||||||||||| |||||||||||||||||| |||  | ||||||| || || |||||| |||||    
T  31404630 cttgtggtttgtgctttcctctttgattcctagattagatctaggtgctgttattgttgattattgcttgtgctcactttgatattgattactattttcc 31404531  T
Q  119 tttgctccacacatcttactttgtattggtgtggtttt 156  Q
    ||||||||||||||| || || ||||||| ||| ||||    
T  31404530 tttgctccacacatcatagttcgtattggagtgatttt 31404493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 26954240 - 26954106
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||| ||||||||||| |||||  ||      ||||||  | |||||||||||||| |||||    
T  26954240 gttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttg-ttatttcttatgtttactttgaaattggttactactttcttttgc 26954142  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || |||||||||||||| |||||||    
T  26954141 tccacacatcatagtttgtattggtgtgattttgag 26954106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 5406154 - 5406002
Alignment:
Q  20 ttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcct 119  Q
    ||||| ||| |||||||| ||||| |||||| |||||||||||||| | ||||||   ||||||| |||  | ||||||  || ||||||||||||| ||    
T  5406154 ttgtggtttgtgcttttctctttgattcctagattagatctaggtgctattattg---attattgcttgtgctcactttaatattggttactacttttct 5406058  T
Q  120 ttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    || ||||||||||| || ||||||||||||||  ||| ||| |||||| |||||||    
T  5406057 ttactccacacatcatagtttgtattggtgtgactttaagaccggaattcacaaca 5406002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 5410479 - 5410327
Alignment:
Q  20 ttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcct 119  Q
    ||||| ||| |||||||| ||||| |||||| |||||||||||||| | ||||||   ||||||| |||  | ||||||  || ||||||||||||| ||    
T  5410479 ttgtggtttgtgcttttctctttgattcctagattagatctaggtgctattattg---attattgcttgtgctcactttaatattggttactacttttct 5410383  T
Q  120 ttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    || ||||||||||| || ||||||||||||||  ||| ||| |||||| |||||||    
T  5410382 ttactccacacatcatagtttgtattggtgtgactttaagaccggaattcacaaca 5410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 412368 - 412438
Alignment:
Q  86 ttgcacccactttgttag-tggttactactttcctttgctccacacatcttactttgtattggtgtggttt 155  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  412368 ttgcacacactttgtttggtggttactactttcctttgctccacacatcatacttggtattggtgtggttt 412438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 33160300 - 33160177
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||| | ||| || ||| ||| |   ||||||  | ||||||||| ||||||||||    
T  33160300 gttttgtgcttttcactttgattactagattagatctaggtgttgttaatattg-ttgttgcttgtatttactttgaaattggttactattttcctttgc 33160202  T
Q  124 tccacacatcttactttgtattggt 148  Q
    |||||||||| || |||||||||||    
T  33160201 tccacacatcatagtttgtattggt 33160177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 16555109 - 16555223
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc-ttact 138  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||| || |||||||| ||| ||||| |||||||||||| ||| |    
T  16555109 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacacactttgtttggtggttaccactctccttggctccacacatcattatt 16555207  T
Q  139 ttgtattggtgtggtt 154  Q
    | ||||||||||||||    
T  16555208 tagtattggtgtggtt 16555223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 16578446 - 16578332
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc-ttact 138  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||| || |||||||| ||| ||||| |||||||||||| ||| |    
T  16578446 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacacactttgtttggtggttaccactctccttggctccacacatcattatt 16578348  T
Q  139 ttgtattggtgtggtt 154  Q
    | ||||||||||||||    
T  16578347 tagtattggtgtggtt 16578332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 16616934 - 16617048
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc-ttact 138  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||| || |||||||| ||| ||||| |||||||||||| ||| |    
T  16616934 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacacactttgtttggtggttaccactctccttggctccacacatcattatt 16617032  T
Q  139 ttgtattggtgtggtt 154  Q
    | ||||||||||||||    
T  16617033 tagtattggtgtggtt 16617048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 16631665 - 16631779
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc-ttact 138  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||| || |||||||| ||| ||||| |||||||||||| ||| |    
T  16631665 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacacactttgtttggtggttaccactctccttggctccacacatcattatt 16631763  T
Q  139 ttgtattggtgtggtt 154  Q
    | ||||||||||||||    
T  16631764 tagtattggtgtggtt 16631779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 16653352 - 16653466
Alignment:
Q  41 ttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttg-ttagtggttactactttcctttgctccacacatc-ttact 138  Q
    |||||||||| |||||||||||||| |||| |||||| || ||| |||||| ||||||| || |||||||| ||| ||||| |||||||||||| ||| |    
T  16653352 ttgtttcctagattagatctaggtggtgtt-ttgttgtttgttgcttgcacacactttgtttggtggttaccactctccttggctccacacatcattatt 16653450  T
Q  139 ttgtattggtgtggtt 154  Q
    | ||||||||||||||    
T  16653451 tagtattggtgtggtt 16653466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 16569245 - 16569347
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc-tttgctccaca 129  Q
    ||||||||||||| || ||| |||||||||||||| || |||||||| |||||| |||    ||||||| |  ||||||||||||||| |||||||||||    
T  16569245 gcttttcactttgatttctagattagatctaggtgctgctattgttg-ttattgcttgagttcactttgattttggttactactttccttttgctccaca 16569343  T
Q  130 catc 133  Q
    ||||    
T  16569344 catc 16569347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 33211139 - 33211086
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttg 77  Q
    ||||| || ||||||||||| |||||| |||||||||||||||| |||||||||    
T  33211139 gttttgtgattttcactttgattcctagattagatctaggtgttattattgttg 33211086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 3038806 - 3038742
Alignment:
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    ||||| || |||||| ||||||||||||||| ||||||| || ||||||||||| || |||||||    
T  3038806 ctttgatattggttattactttcctttgctcgacacatcatagtttgtattggtctgattttgag 3038742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 14521624 - 14521585
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgtt 70  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  14521624 gcttttcactttgattcctagattagatctaggtgttgtt 14521585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 3038869 - 3038828
Alignment:
Q  32 cttttcactttgtttcctaaattagatctaggtgttgttatt 73  Q
    |||||||||||| || ||| ||||||||||||||||||||||    
T  3038869 cttttcactttgattactatattagatctaggtgttgttatt 3038828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 22963568 - 22963507
Alignment:
Q  115 ttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    |||||| |||||||||||| || |||||||||||||| |||||||   ||||| ||||||||    
T  22963568 ttccttagctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaacat 22963507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 23824825 - 23824886
Alignment:
Q  115 ttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    |||||| |||||||||||| || |||||||||||||| |||||||   ||||| ||||||||    
T  23824825 ttccttagctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaacat 23824886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 9182860 - 9182824
Alignment:
Q  104 tggttactactttcctttgctccacacatcttacttt 140  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  9182860 tggttactactttcctttactccacacatcatacttt 9182824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 434747 - 434903
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||| |  ||||||  || |||||||||||||||    
T  434747 cttgtgttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgattgaaaacactttaataatggttactactttcc 434846  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || || |||||||||||  ||||||| |||||| |||||||    
T  434847 tttgctccacacatcatagttcgtattggtgtgactttgagaacggaattcacaaca 434903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 35854129 - 35854285
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||    
T  35854129 cttgtgttttatgcttttcactttgcttcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggttactactttcc 35854228  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || |||||||| ||||| ||||||||  ||||| |||||||    
T  35854229 tttgctccacacatcatagtttgtatttgtgtgattttgagactggaattcacaaca 35854285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 39731560 - 39731723
Alignment:
Q  1 tcttccctctccttttatcttgtgttt------tatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcaccca 94  Q
    |||||||||||||||||||||||| ||      | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  39731560 tcttccctctccttttatcttgtgcttgtggtttgtgcttttcactttgtttcctagattagatctaggtgttgttattgttgattattgcttgcaccca 39731659  T
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttg-tattggtgtggttttg 157  Q
    |||||||| ||||||||||||| ||||| |  ||| ||| ||||||| ||||||||||||||||    
T  39731660 ctttgttattggttactacttttctttgttttacatatcatactttgttattggtgtggttttg 39731723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 48409020 - 48409152
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||||||||||||    
T  48409020 cttgtgatttgtgcttttcactttgatacctagattagatctaggtgctgttattgttgattattgcttgcactcactttgttattggttactactttcc 48409119  T
Q  119 tttgctccacacatcttactttgtattggtgtg 151  Q
    ||||||||||||||| || || |||||||||||    
T  48409120 tttgctccacacatcatatttcgtattggtgtg 48409152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 4178986 - 4179118
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| || ||||||||||| |||||| |||||||||||||| |||||||||||||||||| || ||  |||||||||| |||||||||||||||    
T  4178986 cttgtggtttgtgtttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttacattcactttgttattggttactactttcc 4179085  T
Q  119 tttgctccacacatcttactttgtattggtgtg 151  Q
    ||||||||||||||| || ||||||||||||||    
T  4179086 tttgctccacacatcatagtttgtattggtgtg 4179118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 29991266 - 29991422
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||  |||  | ||||||| || ||||||||||||| |    
T  29991266 cttgtggtttgtgcttttctctttgattcctatattagatctaggtgttgttattgttgattattacttgtgctcactttgatattggttactacttttc 29991365  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || ||||||||||||||  ||||||| |||||| |||||||    
T  29991366 tttgctccacacatcatagtttgtattggtgtgactttgagaacggaattcacaaca 29991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 25766912 - 25766757
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| || ||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| | |||||||||| ||||||||||||| |    
T  25766912 cttgtgatttgtgtttttcactttgatacctagattagatctaggtgctgttattgttgattattgcttgcgctcactttgttattggttactacttttc 25766813  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||||||||||| || || |||||||||| | ||||||| |||||| |||||||    
T  25766812 tttgctccacacatcatatttcgtattggtgt-gatttgagaccggaattcacaaca 25766757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 25616073 - 25616208
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || ||||||||||||||||||||    
T  25616073 gttttgtgcttttcacttcgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgc 25616172  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||| ||||| || |||||||||||||| |||||||    
T  25616173 tccatacatcatagtttgtattggtgtgattttgag 25616208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 23555268 - 23555395
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    |||| |||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || |||||||||||||||||||||||||||||    
T  23555268 tttttactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacat 23555367  T
Q  133 cttactttgtattggtgtg-gttttgag 159  Q
    | || |||||||||||||| ||||||||    
T  23555368 catagtttgtattggtgtgagttttgag 23555395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 48489649 - 48489784
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |      ||||||| || ||||||||||||||||||||    
T  48489649 gttttgtgcttttcactttgattcctagattagatctaggtgttgttattgttgattattgctcatgttcactttgatattggttactactttcctttgc 48489748  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || || ||||||||||| |||||||    
T  48489749 tccacacatcatagttggtattggtgtgattttgag 48489784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 18126864 - 18127000
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||||||| |||    ||||||| || || ||||||||||||||| |    
T  18126864 gttttgtgcttttcactttgattcctagattagatctaggtgttgttattcttgattattgcttgtgttcactttgatattgattactactttcctttac 18126963  T
Q  124 tccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||| || |||||||||||||| ||||||||    
T  18126964 tccacacatcatagtttgtattggtgtgagttttgag 18127000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 27348035 - 27348170
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| || ||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || ||||| ||||||||||||||    
T  27348035 gttttgtgtttttcactttgattcctagattagatctaggtgctgttattgttgattattgtttgtgttcactttgatattggttgctactttcctttgc 27348134  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || |||||||| ||||| |||||||    
T  27348135 tccacacatcataatttgtatttgtgtgattttgag 27348170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 43504130 - 43503947
Alignment:
Q  1 tcttccctctccttttatcttgtg------ttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattg--cacc 92  Q
    ||||||||||||||||||||||||      ||||||||||||||||||| |||||| ||||||||||   | |||| ||||||||||||| |||  |||     
T  43504130 tcttccctctccttttatcttgtgcttgtgttttatgcttttcactttgattcctagattagatcta---gctgtttttgttgattattgcttgcacaca 43504034  T
Q  93 cactttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtg----gttttgagatcggaatacacaaca 175  Q
    ||||||||| |||||||| ||| |||||||||||||||||| || || |||||||||||    | |||||||||||||| |||||||    
T  43504033 cactttgttggtggttaccactctcctttgctccacacatcatatttcgtattggtgtgacacgatttgagatcggaattcacaaca 43503947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 43864462 - 43864598
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || || |||| |||||||||| |    
T  43864462 gttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattgattaccactttcctttac 43864561  T
Q  124 tccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||| || |||||||||||||| ||||||||    
T  43864562 tccacacatcatagtttgtattggtgtgagttttgag 43864598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 41648956 - 41648829
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| |||||| |||||||||||||| || |||||||| |||||| |||    ||||||| || | |||||||||||||||||||||||||    
T  41648956 gcttttcactttgattcctagattagatctaggtgctgctattgttg-ttattgcttgtgttcactttgatattagttactactttcctttgctccacac 41648858  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    ||| || |||||||||||||| |||||||    
T  41648857 atcatagtttgtattggtgtgattttgag 41648829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 47676086 - 47675960
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || ||||||||||||||||||||    
T  47676086 gttttgtgcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgc 47675988  T
Q  124 tccacacatcttactttgtattggtgtg 151  Q
    |||||||||| || ||||||||||||||    
T  47675987 tccacacatcatagtttgtattggtgtg 47675960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 48491794 - 48491944
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| ||||||||| |||| |||||| |||||||||||| |||||||||||||||||||| |||    ||||||| || |||||||||||||||||| |    
T  48491794 gttttgtgcttttcattttgattcctatattagatctaggcgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttac 48491893  T
Q  124 tccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||| |||||  || || ||||||||||| |||||| ||| |||| |||||||    
T  48491894 tccgcacattatagttggtattggtgtgattttga-atccgaattcacaaca 48491944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 495928 - 495803
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| |||||| |||     |||||| || |||||||||||||||||||||||||| ||    
T  495928 ttttcactttgattcctagattagatctaggtgttgttattgttg-ttattgtttgtgtttactttgatattggttactactttcctttgctccacatat 495830  T
Q  133 cttactttgtattggtgtggttttgag 159  Q
    | || |||||||| ||||| |||||||    
T  495829 cataatttgtattagtgtgattttgag 495803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 24790240 - 24790355
Alignment:
Q  42 tgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttag-tggttactactttcctttgctccacacatcttacttt 140  Q
    ||||||||| |||||||||||||| |||| ||||||||||||  |||||| ||||||||| | ||||||| ||||||| |||||||||||||| ||||||    
T  24790240 tgtttcctagattagatctaggtggtgtt-ttgttgattattacttgcacgcactttgtttggtggttaccactttccgttgctccacacatcatacttt 24790338  T
Q  141 gtattggtgtggttttg 157  Q
    | ||||||||| |||||    
T  24790339 gcattggtgtgtttttg 24790355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 4586379 - 4586506
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| ||||||||||||||||||||||||| ||||||| |||    |||||||  | ||||||| ||||||||||||    
T  4586379 gttttgtgcttttcactttgattactagattagatctaggtgttgttattgtttattattgcttgtgttcactttgaaattggttaccactttcctttgc 4586478  T
Q  124 tccacacatcttactttgtattggtgtg 151  Q
    |||||||||| || |||  |||||||||    
T  4586479 tccacacatcatagtttacattggtgtg 4586506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 26417541 - 26417686
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| ||| || |||| ||||||||| |||||||||||||||||| |||     |||||| || |||||||||||||||||| |||||||     
T  26417541 gcttttcactttgattcatagattatatctaggtgctgttattgttgattattgcttgtggttactttgatattggttactactttcctttactccacat 26417640  T
Q  131 atcttactttgtattggtgtg-gttttgagatcggaatacacaacat 176  Q
    ||| || |||||||||||||| |||||||| || |||| ||||||||    
T  26417641 atcatagtttgtattggtgtgagttttgag-tccgaattcacaacat 26417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 31732919 - 31732783
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| ||||||||||   |||||||||||||||||||| |||    |||||||  | |||||||||||||| |||||    
T  31732919 gttttgtgcttttcactttgattactagattagatctaaaggttgttattgttgattattgcttgtgttcactttgaaattggttactactttcatttgc 31732820  T
Q  124 tccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||| || |||||| ||||||| ||||||||    
T  31732819 tccacacatcatagtttgtactggtgtgagttttgag 31732783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 41317381 - 41317262
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||||||||||||| ||    
T  41317381 gcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgctccaaac 41317283  T
Q  131 atcttactttgtattggtgtg 151  Q
    ||| || ||||||||||||||    
T  41317282 atcatagtttgtattggtgtg 41317262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 20344089 - 20344250
Alignment:
Q  1 tcttccctctccttttatcttgtg------ttttatgcttttcactttgtttcctaaattagatctaggtgttg--ttattgttgattattgattgcacc 92  Q
    ||||||||||||||||||||||||      |||| || || |||||| |||||||| |||||||||||||| ||  || |||| |||| ||| ||||||     
T  20344089 tcttccctctccttttatcttgtgattgtgttttgtgtttctcactt-gtttcctagattagatctaggtgctggttttttgtcgattgttgcttgcaca 20344187  T
Q  93 cactttgttag-tggttactactttcctttgctccacacatcttactttgtattggtgtggtt 154  Q
    ||||||||| | ||||||| ||| |||||||||||||||||| | ||||| ||||||||||||    
T  20344188 cactttgtttggtggttaccactctcctttgctccacacatcattctttgcattggtgtggtt 20344250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 19502406 - 19502532
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||| || ||| ||| |   ||||||  | |||||||||||||||||||||||||||||    
T  19502406 ttttcactttgattactagattagatctaggtgttgttattattg-ttgttgcttgtatttactttgaaattggttactactttcctttgctccacacat 19502504  T
Q  133 cttactttgtattggtgtg-gttttgag 159  Q
    | || |||||||| ||||| ||||||||    
T  19502505 catagtttgtattagtgtgagttttgag 19502532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 47673886 - 47673768
Alignment:
Q  32 cttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacaca 131  Q
    |||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||| |||| ||||||||    
T  47673886 cttttcactttgattactagattagatctaggtgttgttattattg-ttgttgtttgtgttcactttgatattggttactactttcttttgttccacaca 47673788  T
Q  132 tcttactttgtattggtgtg 151  Q
    || || ||||||||||||||    
T  47673787 tcatagtttgtattggtgtg 47673768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 1113871 - 1114022
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| || |||||| |||| |||||| |||||||||||||||| ||||||||| |||||| |||     |||||| || | ||||| ||||||||||||    
T  1113871 gttttgtgtttttcattttgattcctagattagatctaggtgttattattgttg-ttattgcttgtgtttactttgatattagttaccactttcctttgc 1113969  T
Q  124 tccacacatcttactttgtattggtgtg-gttttgagatcggaatacacaacat 176  Q
    |||||||||| || ||||||||| |||| |||||||  ||||||| ||||||||    
T  1113970 tccacacatcatagtttgtattgatgtgagttttga-ttcggaattcacaacat 1114022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 14069776 - 14069648
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| || ||| ||| |||     ||||||  | | |||||||||||||||||||||||||    
T  14069776 gcttttcactttgattactagattagatctaggtgttgttattatt-attgttgcttgtgtttactttgaaattagttactactttcctttgctccacac 14069678  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| || |||||||||||||| ||||||||    
T  14069677 atcatagtttgtattggtgtgagttttgag 14069648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 14379804 - 14379676
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| || ||| ||| |||     ||||||  | | |||||||||||||||||||||||||    
T  14379804 gcttttcactttgattactagattagatctaggtgttgttattatt-attgttgcttgtgtttactttgaaattagttactactttcctttgctccacac 14379706  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| || |||||||||||||| ||||||||    
T  14379705 atcatagtttgtattggtgtgagttttgag 14379676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 8153563 - 8153690
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| ||  || || ||||||||||||||||||| ||| || ||| |||  | ||||||| || || |||||||||||||||||||||| |    
T  8153563 gcttttcactttgattattagatcagatctaggtgttgttattattg-ttgttgcttgtgctcactttgatattgattactactttcctttgctccacgc 8153661  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    ||| || |||||||| ||||| |||||||    
T  8153662 atcatagtttgtattagtgtgattttgag 8153690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 38671093 - 38671040
Alignment:
Q  106 gttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| |||||||    
T  38671093 gttactattttcctttgctccacacatcatagtttgtattggtgtgattttgag 38671040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 36146291 - 36146227
Alignment:
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    ||||| || |||||||||||||||||||||||||||||| || |||||||| ||||  |||||||    
T  36146291 ctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtaattttgag 36146227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 31105339 - 31105224
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||    ||| |||     |||||| || || ||||||||||||||| ||||||||    
T  31105339 gcttttcactttgattcctagattagatcttggtgttgttattgttg----ttgcttgtgtttactttgatattgattactactttcctttactccacac 31105244  T
Q  131 atcttactttgtattggtgtg 151  Q
    ||| || ||| ||||||||||    
T  31105243 atcatagttt-tattggtgtg 31105224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 31519115 - 31519158
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttatt 73  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  31519115 tgcttttcactttgattcctagattagatctaggtgttgttatt 31519158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 30024706 - 30024657
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttatt 73  Q
    ||||| |||||||||||||| || ||| ||||||||||||||||||||||    
T  30024706 gttttgtgcttttcactttgattactagattagatctaggtgttgttatt 30024657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 24525449 - 24525407
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttatt 73  Q
    ||||||||||||| || ||||||| ||||||||||||||||||    
T  24525449 gcttttcactttgattactaaatttgatctaggtgttgttatt 24525407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 133
Target Start/End: Original strand, 23344263 - 23344292
Alignment:
Q  104 tggttactactttcctttgctccacacatc 133  Q
    ||||||||||||||||||||||||||||||    
T  23344263 tggttactactttcctttgctccacacatc 23344292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 23565006 - 23564962
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttg 77  Q
    ||||||||||| || ||| ||||||||||||| ||||||||||||    
T  23565006 ttttcactttgatttctagattagatctaggttttgttattgttg 23564962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 13992246 - 13992114
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||||||||||||    
T  13992246 cttgtgatttgtgcttttcactttgatacctagattagatctaggtgctgttattgttgattattgcttgcactcactttgttattggttactactttcc 13992147  T
Q  119 tttgctccacacatcttactttgtattggtgtg 151  Q
    ||||||||||||||| || || |||||||||||    
T  13992146 tttgctccacacatcatatttcgtattggtgtg 13992114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 48143275 - 48143417
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||    ||||||| || |||||||||||||||||||||||||||||    
T  48143275 ttttcactttgattcctagattagatctaggtgttgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgctccacacat 48143374  T
Q  133 cttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    | || |||||||||||||| |||||||  |||||| |||||||    
T  48143375 catagtttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 31495260 - 31495096
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattg--cacccactttgttagtggttactacttt 116  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||  ||| |||||||||  |||||||||||||    
T  31495260 cttgtgttttatgcttttcactttgtttcctagattagatctaggtgctgtt-ttgttgattattgcttgcacacacactttgttgatggttactacttt 31495162  T
Q  117 cctttgctccacacatcttactttgtattggtgtg----gttttgagatcggaatacacaacatgt 178  Q
    ||||||||||||||||| || || |||||||| ||    | |||||||||||||| ||||||||||    
T  31495161 cctttgctccacacatcatatttcgtattggtatgacacgatttgagatcggaattcacaacatgt 31495096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 5370032 - 5369881
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||    ||||||| || || ||||||||||||||| |    
T  5370032 gttttgtgcttttcactttgattcctagattagatctaggtgctgttattgttgattattgcttgtgttcactttgatattgattactactttcctttac 5369933  T
Q  124 tccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    |||||||||| || |||||||||||||| |||||||| |||||| |||||||    
T  5369932 tccacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 5369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 56178586 - 56178451
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||  |||||| ||||||||||||||||||||||||| ||||||| |||    ||||||| || ||||||||||||||||||||    
T  56178586 gttttgtgcttttcactttcattcctagattagatctaggtgttgttattgtttattattgcttgtgttcactttgatattggttactactttcctttgc 56178487  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || |||||||||||||| |||||||    
T  56178486 tccacacatcatagtttgtattggtgtgattttgag 56178451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 34570364 - 34570230
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||    || |||| || ||||||||||||||||||||    
T  34570364 gttttgtgcttttcactttgattcttagattagatctaggtgttgttattgttgattattgtttgtgttcattttgatattggttactactttcctttgc 34570265  T
Q  124 tccacacatcttactttgtattggtgtggttttga 158  Q
    |||||||||| || ||| |||||||||| ||||||    
T  34570264 tccacacatcatagtttatattggtgtgattttga 34570230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 37740843 - 37740979
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||     ||||||| || || ||||||||||||| |||    
T  37740843 gttttgtgcttttcactttgattcctacattagatctaggtgctgttattgttgattattgattctgttcactttgatattgattactactttcctgtgc 37740942  T
Q  124 tccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||| || |||||||||||||| ||||||||    
T  37740943 tccacacatcatagtttgtattggtgtgagttttgag 37740979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 47038365 - 47038231
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |||||| |||     |||||| || |||||||||||||||||||     
T  47038365 gttttgtgcttttcactttgattcctagattagatctaggtgttgttattgttg-ttattgtttgtgtttactttgatattggttactactttcctttgt 47038267  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || |||||||||||||| |||||||    
T  47038266 tccacacatcatagtttgtattggtgtgattttgag 47038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 52082613 - 52082478
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||||||||||||  |||| |||||| || ||||||||||| |||||||||||||||||| |||    ||||||| || |||||||||||||||||||     
T  52082613 gttttatgcttttctttttgattcctagataagatctaggtgctgttattgttgattattgcttgtgttcactttgatattggttactactttcctttgt 52082514  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||| || |||||||||||||| |||||||    
T  52082513 tccacacatcataatttgtattggtgtgattttgag 52082478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 54199852 - 54199723
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    |||||||||||||| ||| || |||||||||||||| |||||||| ||||||||| |||    ||||||| || |||||||||||||||||||||||| |    
T  54199852 tgcttttcactttgattcttagattagatctaggtgatgttattgctgattattgcttgtgttcactttgatactggttactactttcctttgctccata 54199753  T
Q  130 catcttactttgtattggtgtggttttgag 159  Q
    |||| |  |||||||||||||| |||||||    
T  54199752 catcatcgtttgtattggtgtgattttgag 54199723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 52095312 - 52095177
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||| |||||  ||||| ||||||||||||||||||||||||||||||||  |||    ||||||| || || ||||||||||||||||     
T  52095312 gttttgtgcttttctctttgactcctagattagatctaggtgttgttattgttgattattacttgtgttcactttgatattgattactactttcctttgt 52095213  T
Q  124 tccacacatcttactttgtattggtgtggttttgag 159  Q
    ||||||| || || |||||||||||||| |||||||    
T  52095212 tccacacgtcatagtttgtattggtgtgattttgag 52095177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 48893591 - 48893458
Alignment:
Q  25 ttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgct 124  Q
    |||| |||||||||||||| ||| |  |||||||||||||| ||||||||||| |||||| |||     |||||| || |||||||||||||||||||||    
T  48893591 ttttgtgcttttcactttgattcttggattagatctaggtgctgttattgttg-ttattgcttgtgtttactttgatattggttactactttcctttgct 48893493  T
Q  125 ccacacatcttactttgtattggtgtggttttgag 159  Q
    ||||||||| || |||||||||||||| |||||||    
T  48893492 ccacacatcatagtttgtattggtgtgattttgag 48893458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 9927403 - 9927284
Alignment:
Q  30 tgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccaca 129  Q
    |||||||||||||| |||||| |||| ||||||||| |||||||||||||||||| |||     |||||| || |||| |||||||||||||||||||||    
T  9927403 tgcttttcactttgattcctagattaaatctaggtgctgttattgttgattattgcttgtgtttactttgatattggtaactactttcctttgctccaca 9927304  T
Q  130 catcttactttgtattggtg 149  Q
    |||| || ||| ||||||||    
T  9927303 catcatagtttatattggtg 9927284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 29999710 - 29999628
Alignment:
Q  93 cactttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    ||||||| || |||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||| |||||||    
T  29999710 cactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 29999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 5872043 - 5872168
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||| || ||| |||    ||||||| || |||||||||||||||||||||||||||    
T  5872043 gcttttcactttgattactagattagatctaggtgttgttattattg-ttgttgtttgtgttcactttgatattggttactactttcctttgctccacac 5872141  T
Q  131 atcttactttgtattggtgtggttttgag 159  Q
    |||  | |||||||||||||| |||||||    
T  5872142 atc--agtttgtattggtgtgattttgag 5872168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 26175579 - 26175451
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||||||||||||||| ||| | |||| |||     ||||||  | |||||||||||||||||||||||||||    
T  26175579 gcttttcactttgattactagattagatctaggtgttgttattattgct-attgcttgtgtttactttgaaattggttactactttcctttgctccacac 26175481  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| || |||||||||||||| ||||||||    
T  26175480 atcatagtttgtattggtgtgagttttgag 26175451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 46147338 - 46147210
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| ||||||||||||| |||||||| ||| || ||| |||    ||||||| || |||||||||||||||||||||||||||    
T  46147338 gcttttcactttgattactagattagatctaggtattgttattattg-ttgttgcttgtgttcactttgatattggttactactttcctttgctccacac 46147240  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| || |||| ||||||||| ||||||||    
T  46147239 atcatagtttgcattggtgtgagttttgag 46147210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 52467301 - 52467172
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacac 130  Q
    ||||||||||||| || ||| |||||||||| ||||||||||| ||||| |||| |||     |||||| || ||||||| ||||||||||||| |||||    
T  52467301 gcttttcactttgattactagattagatctatgtgttgttattattgatgattgcttgtctttactttgatattggttaccactttcctttgcttcacac 52467202  T
Q  131 atcttactttgtattggtgtg-gttttgag 159  Q
    ||| || |||||||||||||| ||||||||    
T  52467201 atcatagtttgtattggtgtgagttttgag 52467172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 12743875 - 12743743
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||| |||    ||| |||     ||||||  | ||||||||||||||||||||    
T  12743875 gttttgtgcttttcactttgattactagattagatctaggtgttgttattattg----ttgcttgtgtttactttgaaattggttactactttcctttgc 12743780  T
Q  124 tccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||| | || |||||||||||||| ||||||||    
T  12743779 tccacacaacatagtttgtattggtgtgagttttgag 12743743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 31474366 - 31474491
Alignment:
Q  25 ttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgct 124  Q
    |||| |||||||||||||  |||||| |||||||||||||||||||||||||| || ||| |||     |||||| || || ||||||||||| ||||||    
T  31474366 ttttgtgcttttcactttaattcctagattagatctaggtgttgttattgttg-ttgttgtttgtgtttactttgatattgattactactttcatttgct 31474464  T
Q  125 ccacacatcttactttgtattggtgtg 151  Q
     |||||||| |  ||||||||||||||    
T  31474465 acacacatcattgtttgtattggtgtg 31474491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 5429904 - 5429957
Alignment:
Q  31 gcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattg 84  Q
    ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||    
T  5429904 gcttttcactttgattcctagattagatctaggtgctgttattgttgattattg 5429957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 45687066 - 45687002
Alignment:
Q  95 ctttgttagtggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    ||||| || |||||||||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  45687066 ctttgatattggttactactttcctttgctccatacatcatagtttgtattggtgtgattttgag 45687002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 12739500 - 12739368
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| |||||||||||||| || ||  ||||||||||||||||||||||    ||||||| |||     ||||||  | |||||||||||||| ||| |    
T  12739500 gttttgtgcttttcactttgattacttgattagatctaggtgttgttatt----attattgcttgtgtttactttgaaattggttactactttcttttac 12739405  T
Q  124 tccacacatcttactttgtattggtgtg-gttttgag 159  Q
    |||||||||| || |||||||||||||| ||||||||    
T  12739404 tccacacatcatagtttgtattggtgtgagttttgag 12739368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 29254712 - 29254861
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| || ||||||||||| || ||| |||||||||||||||||||||| ||| |  ||| |||    ||||||  || |||||||||||||| |||||    
T  29254712 gttttgtgtttttcactttgattactagattagatctaggtgttgttattattg-tcgttgtttgtgttcactttaatattggttactactttc-tttgc 29254809  T
Q  124 tccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    |||||||||| || |||||||| ||||| |||| || || |||| |||||||    
T  29254810 tccacacatcatagtttgtattagtgtgattttaagttccgaattcacaaca 29254861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 36463336 - 36463195
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||| ||||| || | |||||||||||||||||||||||| ||| || ||| |||     |||||| || |||||| ||||||||||| ||||||||||    
T  36463336 ttttcgctttgattaccaaattagatctaggtgttgttattattg-ttgttgcttgtgtttactttgatattggttattactttcctttactccacacat 36463238  T
Q  133 cttactttgtattggtgtggttttgagatcggaatacacaacat 176  Q
    | || |||||||| ||||| ||||||| || |||| ||||||||    
T  36463237 catagtttgtattagtgtgattttgag-tccgaattcacaacat 36463195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 4588174 - 4588278
Alignment:
Q  25 ttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattg--attgcacccactttgttagtggttactactttcctttg 122  Q
    |||| |||||||||||||| |||||| ||||||| | ||| |||||||||||| |  |||  |||||      |||| |||||||||||| |||||||||    
T  4588174 ttttgtgcttttcactttgattcctatattagatattggttttgttattgttgttgtttgtgattgc------tttgatagtggttactattttcctttg 4588267  T
Q  123 ctccacacatc 133  Q
    |||||||||||    
T  4588268 ctccacacatc 4588278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 6542124 - 6542028
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacat 132  Q
    ||||||||||  |||||| ||||||||||||| ||||||||||||    ||| |||     |||||| || |||||| ||||||||||||||||||||||    
T  6542124 ttttcactttaattcctagattagatctaggttttgttattgttg----ttgcttgtgattactttgatattggttattactttcctttgctccacacat 6542029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 5207717 - 5207666
Alignment:
Q  107 ttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    ||||||||||||||||||||||||| | || ||| |||||||||| |||||||    
T  5207717 ttactactttcctttgctccacacaccata-tttatattggtgtgattttgag 5207666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 36994746 - 36994786
Alignment:
Q  33 ttttcactttgtttcctaaattagatctaggtgttgttatt 73  Q
    ||||||||||| || ||| ||||||||||||||||||||||    
T  36994746 ttttcactttgattactagattagatctaggtgttgttatt 36994786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 11795 - 11935
Alignment:
Q  37 cactttgt-ttcctaaattag-atctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgctccacacatct 134  Q
    |||||||| |||||| ||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||     
T  11795 cactttgtattcctagattagtatctaggtgctgttattgttgattattgcttgcacacactttgttagtggttactactttcctttgctccacacatca 11894  T
Q  135 tactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    || || |||||||||||  ||||||| |||||| |||||||    
T  11895 tagttcgtattggtgtgactttgagaccggaattcacaaca 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 1129 - 1285
Alignment:
Q  19 cttgtgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcc 118  Q
    |||||| ||| |||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||||  ||| |||| | ||||||||||| |||    
T  1129 cttgtggtttgtgcttttcactttgatacctagattagatctaggtggtgttattgttgattattgcttgcattcacattgtcattggttactactatcc 1228  T
Q  119 tttgctccacacatcttactttgtattggtgtggttttgagatcggaatacacaaca 175  Q
    |||| |||||||||| || || |||||||||||  ||||||| |||||| |||||||    
T  1229 tttgttccacacatcatagttcgtattggtgtgactttgagaccggaattcacaaca 1285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 114820 - 114955
Alignment:
Q  23 tgttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttg 122  Q
    |||||| |||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||    ||||||| || |||||| ||||||||||||    
T  114820 tgttttgtgcttttcactttgattcctagattagatataggtgttgttattgttgattattgattgtgttcactttgatattggttattactttcctttg 114919  T
Q  123 ctccacacatctta-ctttgtattggtgtggttttg 157  Q
    ||||||||||| ||  |||||||||||||| |||||    
T  114920 ctccacacatcatagttttgtattggtgtgattttg 114955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 20365 - 20241
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattgcacccactttgttagtggttactactttcctttgc 123  Q
    ||||| || ||||||||||| |||||| |||||||||||||| |||||||||| ||||||| |||    |||||||  | |||||||||| |||||||||    
T  20365 gttttgtgtttttcactttgattcctagattagatctaggtgctgttattgttaattattgcttgtgttcactttgacattggttactaccttcctttgc 20266  T
Q  124 tccacacatcttactttgtattggt 148  Q
    |||||||||| || |||||||||||    
T  20265 tccacacatcatagtttgtattggt 20241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 148982 - 148927
Alignment:
Q  104 tggttactactttcctttgctccacacatcttactttgtattggtgtggttttgag 159  Q
    |||||||||||||||||||||||||||||  || ||||||||| |||| |||||||    
T  148982 tggttactactttcctttgctccacacattatagtttgtattgatgtgattttgag 148927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 1452 - 1325
Alignment:
Q  24 gttttatgcttttcactttgtttcctaaattagatctaggtgttgttattgttgattattgattg-cacccactttgttagtggttactactttcctttg 122  Q
    |||||||| ||||||||||  |||||| |||||||||||||| |||||| |||| |||||  |||      |||||  || || ||||||||||||||||    
T  1452 gttttatgtttttcactttaattcctagattagatctaggtgctgttatcgttg-ttattacttgtgtttaactttaatattgattactactttcctttg 1354  T
Q  123 ctccacacatcttactttgtattggtgtg 151  Q
    ||||||||||| ||  |||||||||||||    
T  1353 ctccacacatcatagattgtattggtgtg 1325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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