View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_low_2 (Length: 1003)
Name: NF21553_low_2
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 25)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 181 - 674
Target Start/End: Complemental strand, 23408821 - 23408328
Alignment:
| Q |
181 |
tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
280 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
23408821 |
tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatc |
23408722 |
T |
|
| Q |
281 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
23408721 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagac |
23408622 |
T |
|
| Q |
381 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatttcgtttatgtttattggt |
480 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
23408621 |
ttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatttcgattatgtttattggt |
23408522 |
T |
|
| Q |
481 |
ttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacttgaaaattgc |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23408521 |
ttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacatgaaaattgc |
23408422 |
T |
|
| Q |
581 |
ttgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagactgaatacattttctcataaaatatagttggattcctcct |
674 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408421 |
ttgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagacggaatacattttctcataaaatatagttggattcctcct |
23408328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 185 - 459
Target Start/End: Complemental strand, 23415986 - 23415712
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
23415986 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg |
23415887 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415886 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
23415787 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23415786 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac |
23415712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 181 - 458
Target Start/End: Complemental strand, 23453653 - 23453376
Alignment:
| Q |
181 |
tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
280 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
23453653 |
tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc |
23453554 |
T |
|
| Q |
281 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23453553 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtc |
23453454 |
T |
|
| Q |
381 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
23453453 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga |
23453376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 185 - 458
Target Start/End: Original strand, 23868733 - 23869006
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868733 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
23868832 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23868833 |
atatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt |
23868932 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
458 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || ||||||| |
|
|
| T |
23868933 |
tcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga |
23869006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 185 - 458
Target Start/End: Original strand, 24307224 - 24307497
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307224 |
gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
24307323 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24307324 |
atatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt |
24307423 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || || ||||||| |
|
|
| T |
24307424 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga |
24307497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 181 - 458
Target Start/End: Original strand, 23402071 - 23402348
Alignment:
| Q |
181 |
tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
280 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
23402071 |
tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc |
23402170 |
T |
|
| Q |
281 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23402171 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggc |
23402270 |
T |
|
| Q |
381 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||| || ||||||| |
|
|
| T |
23402271 |
ttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga |
23402348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 185 - 458
Target Start/End: Original strand, 23885828 - 23886101
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
23885828 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg |
23885927 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23885928 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt |
23886027 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || ||||||| |
|
|
| T |
23886028 |
tcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga |
23886101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 185 - 458
Target Start/End: Original strand, 26832736 - 26833009
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26832736 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26832835 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26832836 |
atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26832935 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
458 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26832936 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga |
26833009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 185 - 458
Target Start/End: Original strand, 26434025 - 26434298
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26434025 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26434124 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26434125 |
atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26434224 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
458 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26434225 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga |
26434298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 185 - 458
Target Start/End: Original strand, 26435805 - 26436078
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26435805 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26435904 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26435905 |
atatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26436004 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
458 |
Q |
| |
|
||| || ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
26436005 |
tctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga |
26436078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 185 - 458
Target Start/End: Complemental strand, 34662318 - 34662045
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
34662318 |
gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg |
34662219 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| | || ||||||||||| || || ||||| ||||||||||||||||| || || ||||| |
|
|
| T |
34662218 |
atatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgt |
34662119 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
458 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
34662118 |
tcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga |
34662045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 853 - 985
Target Start/End: Complemental strand, 23408093 - 23407961
Alignment:
| Q |
853 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctgtaagcacaaacacatctgatacaaaatatatacatgaaagttc |
952 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408093 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctttaagcacaaacacatctgatacaaaatatatacatgaaagttc |
23407994 |
T |
|
| Q |
953 |
agaggtgagcttagaaggaaagatacatggtgt |
985 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
23407993 |
agaggtgagcttagaaagaaagatacatggtgt |
23407961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 709 - 843
Target Start/End: Complemental strand, 23408326 - 23408192
Alignment:
| Q |
709 |
tgtggattgtgattgtttataattaatcaattttattgacactgtaatttgatcttggcttagatgcaaaattaaggatgttttttgctgtaattctgca |
808 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23408326 |
tgtgggttgtgattgtttataattaatcaattttactgacactgtaatttgatcttggctgagatgcaaaattaaggatgttttttgctgtaattgtgca |
23408227 |
T |
|
| Q |
809 |
gaagatatctgctatatgtttaattataagtggac |
843 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408226 |
gaagatatctgctatatgtttaattataagtggac |
23408192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 24307060 - 24307186
Alignment:
| Q |
21 |
agggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
24307060 |
agggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaa |
24307159 |
T |
|
| Q |
121 |
gctaccaaaggaaggtggttcagctgc |
147 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
24307160 |
gctaccaaaggaaggtggttccgctgc |
24307186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 23401911 - 23402031
Alignment:
| Q |
21 |
agggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaa |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23401911 |
agggagagaagaagccagcggagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaa |
23402010 |
T |
|
| Q |
121 |
gctaccaaaggaaggtggttc |
141 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23402011 |
gctaccaaaggaaggtggttc |
23402031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 26832574 - 26832701
Alignment:
| Q |
23 |
ggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26832574 |
ggagagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagc |
26832673 |
T |
|
| Q |
123 |
taccaaaggaaggtggttcagctgccgg |
150 |
Q |
| |
|
| |||||||||||||||||||| ||||| |
|
|
| T |
26832674 |
ttccaaaggaaggtggttcagccgccgg |
26832701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 23408981 - 23408861
Alignment:
| Q |
21 |
agggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaa |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
23408981 |
agggagagaagaagccagcggagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaa |
23408882 |
T |
|
| Q |
121 |
gctaccaaaggaaggtggttc |
141 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23408881 |
gctaccaaaggaaggtggttc |
23408861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 26433863 - 26433990
Alignment:
| Q |
23 |
ggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
26433863 |
ggagagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagc |
26433962 |
T |
|
| Q |
123 |
taccaaaggaaggtggttcagctgccgg |
150 |
Q |
| |
|
| |||||||||||||||||||| ||||| |
|
|
| T |
26433963 |
ttccaaaggaaggtggttcagccgccgg |
26433990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 26435643 - 26435770
Alignment:
| Q |
23 |
ggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
26435643 |
ggagagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagc |
26435742 |
T |
|
| Q |
123 |
taccaaaggaaggtggttcagctgccgg |
150 |
Q |
| |
|
| |||||||||||||||||||| ||||| |
|
|
| T |
26435743 |
ttccaaaggaaggtggttcagccgccgg |
26435770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 23416147 - 23416018
Alignment:
| Q |
21 |
agggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaa |
120 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
23416147 |
agggagagaagaagccagcggagaagaaaccagctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaa |
23416048 |
T |
|
| Q |
121 |
gctaccaaaggaaggtggttcagctgccgg |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23416047 |
gctaccaaaggaaggtggttcagctgccgg |
23416018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 23868569 - 23868698
Alignment:
| Q |
21 |
agggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaa |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |
|
|
| T |
23868569 |
agggagagaagaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaa |
23868668 |
T |
|
| Q |
121 |
gctaccaaaggaaggtggttcagctgccgg |
150 |
Q |
| |
|
||| |||||||||||||||||||| ||||| |
|
|
| T |
23868669 |
gcttccaaaggaaggtggttcagccgccgg |
23868698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 23885664 - 23885793
Alignment:
| Q |
21 |
agggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |
|
|
| T |
23885664 |
agggagagaagaagccagcagagaagaaaccagctgaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaa |
23885763 |
T |
|
| Q |
121 |
gctaccaaaggaaggtggttcagctgccgg |
150 |
Q |
| |
|
||| |||||||||||||||||||| ||||| |
|
|
| T |
23885764 |
gcttccaaaggaaggtggttcagccgccgg |
23885793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 274 - 406
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
| Q |
274 |
tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca |
373 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23451920 |
tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca |
23451821 |
T |
|
| Q |
374 |
gtcagacttgttcttcctggtgaattggccaag |
406 |
Q |
| |
|
||||| |||||||| || ||||||||||||||| |
|
|
| T |
23451820 |
gtcaggcttgttctgcccggtgaattggccaag |
23451788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 23453813 - 23453696
Alignment:
| Q |
21 |
agggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaa |
120 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
23453813 |
agggagagaagaagccagcggagaagaaacctgctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaa |
23453714 |
T |
|
| Q |
121 |
gctaccaaaggaaggtgg |
138 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
23453713 |
gcttcctaaggaaggtgg |
23453696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 34662463 - 34662359
Alignment:
| Q |
40 |
agagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggt |
139 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||| |
|
|
| T |
34662463 |
agagaagaaacctgcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaaagcggt |
34662364 |
T |
|
| Q |
140 |
tcagc |
144 |
Q |
| |
|
||||| |
|
|
| T |
34662363 |
tcagc |
34662359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 2e-48; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 185 - 435
Target Start/End: Original strand, 41670401 - 41670651
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
||||| |||||||||||||| ||||| || || || || ||||| || |||||||||||||||||||| || ||||| || |||||||| |||||||||| |
|
|
| T |
41670401 |
gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg |
41670500 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||||||| | |||||||||||||| ||||||||||| |||| || |||||||| || | ||||| |
|
|
| T |
41670501 |
atatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt |
41670600 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
435 |
Q |
| |
|
||| || |||||| | || ||||||||||| ||||| || ||||||||||| |
|
|
| T |
41670601 |
tctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt |
41670651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 182 - 455
Target Start/End: Original strand, 40795767 - 40796040
Alignment:
| Q |
182 |
gtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca |
281 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || || || ||||| || |||||||| ||||| ||||| || ||||| || |||||||||||||||| |
|
|
| T |
40795767 |
gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca |
40795866 |
T |
|
| Q |
282 |
atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact |
381 |
Q |
| |
|
|||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| || | || ||||||||||| || | || |
|
|
| T |
40795867 |
atgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgtct |
40795966 |
T |
|
| Q |
382 |
tgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctt |
455 |
Q |
| |
|
|||||||| || ||| | |||||||| ||||| || || || ||||| || || ||||| ||||||||||||| |
|
|
| T |
40795967 |
cgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaaatttacaagctctt |
40796040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 333 - 447
Target Start/End: Original strand, 33216594 - 33216708
Alignment:
| Q |
333 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc |
432 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
33216594 |
acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc |
33216693 |
T |
|
| Q |
433 |
tgtgactaagtttac |
447 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
33216694 |
tgtgaccaagtttac |
33216708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 185 - 435
Target Start/End: Original strand, 29391467 - 29391717
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
||||| || ||||| ||||| ||||| || || ||||| ||||| || || || ||||| || |||||| ||||| || ||||||||||||||||||| |
|
|
| T |
29391467 |
gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg |
29391566 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || || | | || |
|
|
| T |
29391567 |
atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt |
29391666 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
435 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
29391667 |
tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt |
29391717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 45576399 - 45576477
Alignment:
| Q |
380 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
458 |
Q |
| |
|
|||||||| || | ||||||||| ||||||| ||||||||| || ||||| |||||||| || || ||||||||||||| |
|
|
| T |
45576399 |
cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga |
45576477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
| Q |
277 |
catcaatgatatcttcgagaagcttgctcaagaatca |
313 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33216558 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 333 - 456
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
| Q |
333 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||| || |
|
|
| T |
47317431 |
acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc |
47317530 |
T |
|
| Q |
433 |
tgtgactaagtttacaagctctta |
456 |
Q |
| |
|
|||||| |||||||| || ||||| |
|
|
| T |
47317531 |
tgtgaccaagtttactagttctta |
47317554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 185 - 435
Target Start/End: Complemental strand, 40180547 - 40180297
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
||||| |||||||| ||||| ||||| || |||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || | |
|
|
| T |
40180547 |
gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg |
40180448 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
384 |
Q |
| |
|
||||||| ||||| || ||||| ||||| || | | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | || |
|
|
| T |
40180447 |
atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt |
40180348 |
T |
|
| Q |
385 |
tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
435 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
40180347 |
tcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt |
40180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
| Q |
277 |
catcaatgatatcttcgagaagcttgctcaagaatca |
313 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47317395 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 14715355 - 14715420
Alignment:
| Q |
24 |
gagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctc |
89 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||| |
|
|
| T |
14715355 |
gagagaagaagccagctgagaagaaacccgcagaggagaagaaatacactgtcgaggagaaagctc |
14715420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
| Q |
368 |
actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga |
420 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
14715433 |
actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga |
14715485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
| Q |
185 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
284 |
Q |
| |
|
||||| |||||||| || |||||||| || || ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || | |
|
|
| T |
29684701 |
gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg |
29684800 |
T |
|
| Q |
285 |
atatcttcgagaagcttgctcaagaa |
310 |
Q |
| |
|
||||||| |||| || ||||||||| |
|
|
| T |
29684801 |
atatctttaagaaactcgctcaagaa |
29684826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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