View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_22 (Length: 529)
Name: NF21553_low_22
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 5 - 517
Target Start/End: Complemental strand, 35428940 - 35428431
Alignment:
| Q |
5 |
aaccctaataatgttttgtctaaatatatttttattcgatgagtttatacccggtgatcacacatgttaaatattttgagatttccttcgttcaggacag |
104 |
Q |
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| T |
35428940 |
aaccctaataatgttttgtccaaatttatttttatctgatgagattacatccggtcatcacacctcttcaatattttgagatttccttcgatcaggaaag |
35428841 |
T |
|
| Q |
105 |
tattaatttttgaaatatatatacacggaaagattggagaaaaataatgatgagaaagataccaaaattatacttatatctttttctataaatatcctt- |
203 |
Q |
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| T |
35428840 |
tattaatttttgaaatatatatacacggaaagattggagaaaaataataatgagaaagataccaaaattatacttatatctttttctacaaatatccttt |
35428741 |
T |
|
| Q |
204 |
gatggaagattattttagctctataattcggtgcaagatcttgaacaaaaagtatggaaaaattgaggaaaatttaaactatttcaagatacatctattt |
303 |
Q |
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| T |
35428740 |
gatggaaaattattttagctctataattcggcgcaagatcttgaacaaaaagtatggaaaaattgaggaaaatttaaactatttcaagatacatctattt |
35428641 |
T |
|
| Q |
304 |
tgtttcgaggattctcccacaaaattaccatcagaaaattatttgtttaaaaataaattaattgtgacccattgtgtgnnnnnnnagataaactaatgag |
403 |
Q |
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| T |
35428640 |
tgtttcgaggattctcccacaaaattaccaacagaaaattatttctttaaaaagaaattaattgtgacccattgtgtgtttttttagataaactaatgag |
35428541 |
T |
|
| Q |
404 |
acaatttcacctctagctcttcatggaatgtcaatggtcataataggtttggtttgattctcatttaggtgtcgtttttaattcacatgattatagaagt |
503 |
Q |
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| T |
35428540 |
acaatttcacct----ctcttcatggaatgtcaatggtcataataggtttggtttggttctcatttaggtgtcgtttttaattcacatgattatagaagt |
35428445 |
T |
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| Q |
504 |
attttttcatttca |
517 |
Q |
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| T |
35428444 |
attttttcatttca |
35428431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 35419811 - 35419314
Alignment:
| Q |
1 |
ttataaccctaataatgttttgtctaaatatatttttattcgatgagtttatacccggtgatcacacatgttaaatattttgagatttccttcgttcagg |
100 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| |||||| ||| | ||||| ||||||| | || |||||||||||||||||||| ||||| |
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| T |
35419811 |
ttataaccctaataatgttttgtccaaatttatttttatctgatgagattacatccggtcatcacacctcttcaatattttgagatttccttctatcagg |
35419712 |
T |
|
| Q |
101 |
acagtattaatttttgaaatatatatacacggaaagattggagaaaaataatgatgagaaagataccaaaattatacttatatctttttctataaatatc |
200 |
Q |
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| T |
35419711 |
gaagtattaattattgaaatatatatacacggaaaggttggagaaaaataataatgagacagataccaaaattatacttatacctttttctacaaatatc |
35419612 |
T |
|
| Q |
201 |
cttgatggaagattattttagctctataattcggtgcaagatcttgaacaaaaagtatggaaaaattgaggaaaatttaaactatttcaagatacatcta |
300 |
Q |
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| T |
35419611 |
cttgatggcagattattctagctctataatttggcgcaagatcttg-ataaaatgtatggaaaaactgaggaaaattaaaactattttaagatagatcta |
35419513 |
T |
|
| Q |
301 |
ttttgtttcgaggattctcc-cacaaaattaccatcagaaaattatttgtttaaaaataaattaattgtgacccat--tgtgtgnnnnnnnagataaact |
397 |
Q |
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| T |
35419512 |
ttttgtttcgaggtttctccacacaaaattaccaataaaaaattatttgtttaaaaataaatcaattgtgacccattgtgtgtgattttttatacaaaat |
35419413 |
T |
|
| Q |
398 |
aatgagacaatttcacctctagctcttcatggaatgtcaatggtcataataggtttggtttgattctcatttaggtgtcgtttttaattcacatgattat |
497 |
Q |
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| T |
35419412 |
aattagacaatttcacct----cacttcatggaatgtcaatggtcaaaataacattggtttgattctcatttaggtgtcgtttttaattcacatgattct |
35419317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 16436406 - 16436312
Alignment:
| Q |
397 |
taatgagacaatttcacctctagctcttcatggaatgtcaatggtcataataggtttggtttgattctcatttaggtgtcgtttttaattcacatgatt |
495 |
Q |
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||||||||||||||||| | ||||| ||||||||||| |||||| | ||||| ||||||| |||| ||||||||| || |||||||| ||||||| |
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| T |
16436406 |
taatgagacaatttcac----acctctttatggaatgtcattggtcaaagtaggtatggtttgcttcttctttaggtgtggtatttaattcgcatgatt |
16436312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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