View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_23 (Length: 518)
Name: NF21553_low_23
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 507
Target Start/End: Complemental strand, 44299020 - 44298532
Alignment:
| Q |
17 |
tcttcttctagtaatttagaagctggttctgagacaaaggaaccggaacaaattggtcatggtcatggtc------ttgtggttgcaaatggacatgaaa |
110 |
Q |
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| T |
44299020 |
tcttcttctagtaatttagaagctggttctgagacaaaggaaccggaacaaattggtcatggtcatggtcatggtcttgtggttgcaaatggacatgaaa |
44298921 |
T |
|
| Q |
111 |
agaatgtaaatgctgaacaattgatgcgttaccgtgttgtggctcaggttaatcaatttctttcgtattgttaataagatgatgttgttgttatattaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||| |
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| T |
44298920 |
agaatgtaaatgctgaacaattgatgcgttaccgtgttgtggctcaggttaatcaatttctttcgtattgttaa----attttatcattgttatattaat |
44298825 |
T |
|
| Q |
211 |
taatgtaagttgtgtggaattggattaaggttttggagttaggaattgtggtgcactctgtagtgattggtttgtcattgggtgcttcagagaaccattg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44298824 |
taatgtaagttgtgtggaattggattaaggttttggagttaggaattgtggtgcactctgtagtgattggtttgtcattgggtgcttcagagaaccattg |
44298725 |
T |
|
| Q |
311 |
caccataaggcctctcattgctgcactttgcttccatcaactctttgaaggaatgggtttgggtggttgcatacttcaggtaatgattattaattccatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44298724 |
caccataaggcctctcattgctgcactttgcttccatcaactctttgaaggaatgggtttgggtggttgcatacttcaggtaatgatt----attccatt |
44298629 |
T |
|
| Q |
411 |
taatttcattgaagaatttacaatatgagcaaattattccattaatgtgacaggctgattatggaacgaagatgaaatcgacaatgatattcttctt |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44298628 |
taatttcattgaagaatttacaatatgagcaaattattccattaatgtgacaggctgattatggaacgaagatgaaatcgacaatgatattcttctt |
44298532 |
T |
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