View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_25 (Length: 504)
Name: NF21553_low_25
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 61 - 491
Target Start/End: Complemental strand, 6818166 - 6817724
Alignment:
| Q |
61 |
aatgttatgtaatttgtccaaaaaataataataaaatctcaatgatcgttatttgtcataccgctatctcacttttgaagtcgaccgatacacaatgcta |
160 |
Q |
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|||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6818166 |
aatgttatataatttgtccaaaaaataataataaaatatgaatgatcattatttgtcataccgctgtctcacttttgaagtcgaccgatacacaatgcta |
6818067 |
T |
|
| Q |
161 |
tctgagattgactatggtaggaaccacccatccactcatttannnnnnnattcaatcacttactcacttcccactaagattattctttgccggtcattaa |
260 |
Q |
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|| ||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
6818066 |
tccgagattgactatgttaggaaccacccattcactcatttatttttttattcaatcacttactcacctcccgctaagattattctttgccggtcattaa |
6817967 |
T |
|
| Q |
261 |
caataatatatcaaaaccaaatcccatttagatttagatgtcaatttcgttgcaaatggtatgtcctttgtttttacaatattttatctgcaactatatg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
6817966 |
caataatatatcaaaaccaaatcccatttagatttagatgtcaatttcgttgaaaatggtttgtcctctgtttttacaatattttatctgcaactatatg |
6817867 |
T |
|
| Q |
361 |
tctattattttgttagnnnnnnnctatatatttgttgcttgtatacgca------------ttctaaattctattagccgtcgtcatggatcatggacac |
448 |
Q |
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| T |
6817866 |
tctattattttgttagaaaaaaactatatatttgttgcatgtatacgcattctaaattctgttctaaattctattagccgtcgtcatggatcatggacac |
6817767 |
T |
|
| Q |
449 |
cnnnnnnntcatggatcatggagtacttatctacttccaaaat |
491 |
Q |
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| T |
6817766 |
caaaaaaatcatggatcatggagtactcatctacttccaaaat |
6817724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 6818193 - 6818163
Alignment:
| Q |
127 |
tctcacttttgaagtcgaccgatacacaatg |
157 |
Q |
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| T |
6818193 |
tctcacttttgaagtcgaccgatacacaatg |
6818163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 53712099 - 53712155
Alignment:
| Q |
218 |
acttactcacttcccactaagattattctttgccggtcattaacaataatatatcaa |
274 |
Q |
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| T |
53712099 |
acttactcacttcccactaagattattctttgttagtcattacgaataagatatcaa |
53712155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 27707967 - 27707909
Alignment:
| Q |
67 |
atgtaatttgtccaaaaaataataataaaatctcaatgatcgttatttgtcataccgctat |
127 |
Q |
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| T |
27707967 |
atgtaatttgtccaaaaaataat--caaaatatcagtgaccgctatttgtcataccgctat |
27707909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 35819389 - 35819492
Alignment:
| Q |
67 |
atgtaatttgtccaaaaaataataataaaatctcaatgatcgttatttgtcataccgctatctcacttttgaagtcgaccgatacacaatgctatctgag |
166 |
Q |
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||||||||||| ||||||||||| | ||| || ||| || ||||||| ||||||||||| ||||||||| |||| ||| ||| | |||||||||| |
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| T |
35819389 |
atgtaatttgttcaaaaaataatca---aatatcggtgaccgctatttgtaataccgctatcccacttttgaggtcggccgctacgcgccgctatctgag |
35819485 |
T |
|
| Q |
167 |
attgact |
173 |
Q |
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||||||| |
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|
| T |
35819486 |
attgact |
35819492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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