View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_28 (Length: 488)
Name: NF21553_low_28
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 25432084 - 25431626
Alignment:
| Q |
18 |
ctatttctaaactgttaatcattgttgtcagtttcttcaattcccatatcattgttaccagttagcataagaccatctacatatacgcatatgatcagta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25432084 |
ctatttctaaactgttaatcattgttgtcagtttcttcaattcccatatcattgttaccagttagcataagaccatctacatatacgcatatgatcagta |
25431985 |
T |
|
| Q |
118 |
aacatgtttcgtctcttccttttcacataaacaccacgcctattaagatatttgattgaattctcattccataaatactctttccattcnnnnnnncatg |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||| |
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| T |
25431984 |
aacatgtttcgtctcctccttttcacataaacaccacgcccatcaagatatttgattgaattcttattccataaatactctttcctttctttttttcatg |
25431885 |
T |
|
| Q |
218 |
ccctaggtgcttgctttaagtcatataaagcatttgtttagcttgtagactttatcctttttacatctgatactaaatccaagcggttgtttgataaaca |
317 |
Q |
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|||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25431884 |
ccctaggtgcttgcttcaagccatataaagcctttgtttagcttgtagactttatcctttttacatctgatactaaatacaagcggttgtttgataaaca |
25431785 |
T |
|
| Q |
318 |
caatttcttcaagaaaaccgttcagaaaagttgatttcacatctaaatgatacaaaggctaggctttgctagtcgctactacaatgactagcctgatagt |
417 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
25431784 |
caatttcttcaagaagaccgtttagaaaagttgatttcacatctaaatgatacaaaggctaggatttgctagttgctactacaatgactagcctgatagt |
25431685 |
T |
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| Q |
418 |
ttcatgacttgcaactaccgataatacttgattattcatagccttcactttgtaagaat |
476 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
25431684 |
ttcatgacttgcaactacccataatacttcattattcatagccttcactttgtaagaat |
25431626 |
T |
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