View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_29 (Length: 481)
Name: NF21553_low_29
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 155 - 470
Target Start/End: Complemental strand, 39304771 - 39304456
Alignment:
| Q |
155 |
gaacattaactttctcaccttcaatatctctatatttttgaaggtaacattttaatggttccacatattcttcaaagcctaacgttgtaatagcccaaat |
254 |
Q |
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| T |
39304771 |
gaacattaactttctcaccttcaatatctctatatttttgaaggtaacattttaatggttccacatattcttcaaagcctaacgttgtaatagcccaaat |
39304672 |
T |
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| Q |
255 |
aatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccgacacacattcttgaact |
354 |
Q |
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| T |
39304671 |
aatatcatcaccgttgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccgacacacattcttgaact |
39304572 |
T |
|
| Q |
355 |
gtctcttttgcatcctttgagatttttccatttgcaggaataacttttttcattattctaccaacatttgctataggaagaaaacgatcttgttctttat |
454 |
Q |
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| T |
39304571 |
gtctcttttgcatcctttgagatttttccatttgcaggaataacttttttcattattctaccaacatttgctataggaagaaaacgatcttgttctttat |
39304472 |
T |
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| Q |
455 |
tgctattgtgatgatg |
470 |
Q |
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| T |
39304471 |
tgctattgtgatgatg |
39304456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 39304902 - 39304828
Alignment:
| Q |
18 |
catataaggaggttgagacatgagatttgtagatgtatatacactattgttgaaatgttgattatttaattcatc |
92 |
Q |
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| T |
39304902 |
catataaggagtttgagacatgagatttgtagatgtatatacactattgttgaaatgttgattatttaattcatc |
39304828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 394
Target Start/End: Complemental strand, 38281774 - 38281618
Alignment:
| Q |
238 |
gttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccg |
337 |
Q |
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| T |
38281774 |
gttgtcatagcccaaagaagatcatcaccattaattgttttccttttttctctctgacacttatcagaagcttcaccagtaatgaaactaatgaactcag |
38281675 |
T |
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| Q |
338 |
acacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaa |
394 |
Q |
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| T |
38281674 |
agacacattcttgaaccgtttcttttgcttcttttgagattttagcatttgctggaa |
38281618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 44105545 - 44105492
Alignment:
| Q |
398 |
cttttttcattattctaccaacatttgctataggaagaaaacgatcttgttcttt |
452 |
Q |
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| T |
44105545 |
cttttttcatgattctacccacattggctatagga-gaaaacgatcttgttcttt |
44105492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 41866750 - 41866626
Alignment:
| Q |
223 |
tcttcaaagcctaacgttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaa |
322 |
Q |
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|||||||| |||||||| || || ||||||| | ||| || || ||||| ||||||| ||| ||||| ||||| ||||| || ||||| ||||||| | |
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| T |
41866750 |
tcttcaaatcctaacgtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatga |
41866651 |
T |
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| Q |
323 |
aacttatgaactccgacacacattc |
347 |
Q |
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| T |
41866650 |
agctgatgaactccgatacacattc |
41866626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 452
Target Start/End: Original strand, 39786371 - 39786519
Alignment:
| Q |
304 |
gatgcttccccggtgacaaaacttatgaactccgacacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaataacttttt |
403 |
Q |
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|||||||| || || |||||||| | ||||| || ||||| ||||| | || ||||| ||||| || ||||||||| |||||| ||| | | || || |
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| T |
39786371 |
gatgcttcaccagttacaaaactaacaaactctgagacacactcttgcatggtttctttagcatctttcgagatttttgcatttggaggcaagatttgtt |
39786470 |
T |
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| Q |
404 |
tcattattctaccaacatttgctataggaagaaaacgatcttgttcttt |
452 |
Q |
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|||| || ||||||||||| ||||| ||||| ||||||||||| ||||| |
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| T |
39786471 |
tcatgatcctaccaacattagctattggaagcaaacgatcttgctcttt |
39786519 |
T |
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