View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_3 (Length: 886)
Name: NF21553_low_3
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 305 - 870
Target Start/End: Original strand, 32532552 - 32533111
Alignment:
| Q |
305 |
tatgcacacagataagatagtagtgatgtatgttagttccatccttacacaatattcaagcaacaattttcatcagggaattcatctatacataccaaaa |
404 |
Q |
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| T |
32532552 |
tatgcacacagataagatagtagtgatgtatgttagttccatccttacacgatattcaagcaacaattttcatcagggaattcatctatacataccaaaa |
32532651 |
T |
|
| Q |
405 |
gcatttaatcgtatcacttctcgccactccttcggttcgaaccaaccgagattatgaaattttactccatgttgcaacaacaataaatgcaaaacgctag |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
32532652 |
gcatttaatcgtatcacttctcgccactccttcggttcgaaccaaccgagattatgaaagtttactccatgttgcaacaacaataaatacaaaacgctag |
32532751 |
T |
|
| Q |
505 |
aaagactgaaaaacatgtaatttattcaaacatcttactatgaattataaatgttgatatccattcataaaattgtatttttgaacactcaccaccatca |
604 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32532752 |
aaagactgaaaaacatgtaatttattcaaacatcttactatgaattataaatgttgatatccattcataaaattgtatttttgaacactcaccgtcatca |
32532851 |
T |
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| Q |
605 |
aagctcctgggcttaacttcttcactttgctcctagcatgtctgtctttaactattccatagctacaattgtnnnnnnnnnnnnnnnnnntggggtgatg |
704 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
32532852 |
aagctcctg------acttctccactttgctcctagcatgtctgtctttaactattccatagctacaatagtaaaaaaataaaaaacaaatggggtgatg |
32532945 |
T |
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| Q |
705 |
agtttggtcttctaggaaagcaataagatggaccagcaacaattcaaaaattatcaagggagcatgtttcctccaactcatgaaagcttttgctacacca |
804 |
Q |
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| T |
32532946 |
agtttggtcttctaggaaagcaataagatggaccagcaacaattcaaaaattatcaagggagcatgtttcctccaactcatgaaagcttttgctacacca |
32533045 |
T |
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| Q |
805 |
taaacgtactataaccccccatgtaactaactaactgaagttagttagatatcttggggtctgttt |
870 |
Q |
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| T |
32533046 |
taaacgtactataaccccccatgtaactaactaactgaagttagttagatatcttggggtgtgttt |
32533111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 32532289 - 32532551
Alignment:
| Q |
4 |
gggtgagagggataaacgtccagaccaagtgtaaagagatcaaaatatatagctaatgaaagatggagttcagacaatatagcccagaatacggccgtgc |
103 |
Q |
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| T |
32532289 |
gggtgagagggataaacgtccccgccaagtgtaaagagttcaaaatatatagctaatgtaagatggagttcagaccatatagcccagaatatggccgtgc |
32532388 |
T |
|
| Q |
104 |
atgaagaagaggagtctgaagatgcaaccttgtcttaactacaaaagcaggatttgcgcacaagcaaacctgacaacaggtgaaggaaaccaaaatgatt |
203 |
Q |
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|||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32532389 |
atgatgaagaggcgtctgaagctgcaaccttgtcttcactacaaaagcaggatttgcgcacaagcaaacctgacaacaggtgaaggaaaccaaaatgatt |
32532488 |
T |
|
| Q |
204 |
gtaaattcagttctgccacattcatgaatgtgccacagtatgattggttggttttggatccct |
266 |
Q |
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| T |
32532489 |
gtaaattcagttctgccacattcatgaatgtgccacagtatgattggttggttttggatccct |
32532551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 63 - 328
Target Start/End: Original strand, 32547805 - 32548072
Alignment:
| Q |
63 |
aagatggagttcagacaatatagcccagaatacggccgtgcatgaagaagaggagtctgaagatgcaaccttgtcttaactacaaaagcaggatttgcgc |
162 |
Q |
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||||||||| || || |||||||||||| || ||||||| ||| ||| |||||||||||| || || |||||||| |||| || ||||||||| | |
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| T |
32547805 |
aagatggagagcacaccatatagcccagagtatggccgtgtctgatgaataggagtctgaagctgtaatcttgtcttcactagccaaacaggatttgtga |
32547904 |
T |
|
| Q |
163 |
acaagcaaacctgacaacaggtgaaggaaaccaaaatgattgtaaattcagttc-tgcca-cattcatgaatgtgccacagtatgattggttggttttgg |
260 |
Q |
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||||| ||||||||||| |||||||||||| |||||||||| | |||| || || || |||||| |||||| |||||||||| | ||||||||||| |
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| T |
32547905 |
acaaggaaacctgacaataggtgaaggaaattaaaatgattgcaggttcatatcttgacaccattcaggaatgtaccacagtatgttcggttggttttgc |
32548004 |
T |
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| Q |
261 |
atccctaaacatccaactttgaaagctaagaaatatctcaaatatatgcacacagataagatagtagt |
328 |
Q |
| |
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|| |||| |||||||||| | ||||||||| ||||||| ||||| ||| || |||||||| |||||| |
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| T |
32548005 |
attcctacacatccaactattaaagctaagcaatatcttaaatagatgtgcatagataagaaagtagt |
32548072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 32520848 - 32520950
Alignment:
| Q |
275 |
aactttgaaagctaagaaatatctcaaatatatgcacacagataagatagtagtgatgtatgttagttccatccttacacaatattcaagcaacaatttt |
374 |
Q |
| |
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|||||||||||||||| |||||| |||| ||||||||| |||||||| |||||| | |||||||||||||||||| | | |||| ||||||||||||||| |
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| T |
32520848 |
aactttgaaagctaagcaatatcccaaacatatgcacatagataagaaagtagtaaagtatgttagttccatcctcaaataatactcaagcaacaatttt |
32520947 |
T |
|
| Q |
375 |
cat |
377 |
Q |
| |
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||| |
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| T |
32520948 |
cat |
32520950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 452 - 598
Target Start/End: Original strand, 32521294 - 32521442
Alignment:
| Q |
452 |
gagattatgaaattttactccatgttgcaacaacaa-taaatgcaaaacgctagaaagactgaaaaacatgtaatttattc-aaacatcttactatgaat |
549 |
Q |
| |
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|||||||||||| || |||||| |||||||||| || ||||| |||||| | || | || |||| ||||| |||| ||| | ||| |||||||||||||| |
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| T |
32521294 |
gagattatgaaacttcactccaagttgcaacaaaaagtaaatacaaaactcaagcaggattgaacaacatataatctatcccaaatatcttactatgaat |
32521393 |
T |
|
| Q |
550 |
tataaatgttgatatccattcataaaattgtatttttgaacactcacca |
598 |
Q |
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||||||||||||||||| ||| ||| |||||||||| |||||||||||| |
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| T |
32521394 |
tataaatgttgatatcctttcgtaatattgtattttagaacactcacca |
32521442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 598
Target Start/End: Original strand, 32548273 - 32548377
Alignment:
| Q |
494 |
caaaacgctagaaagactgaaaaacatgtaatttattcaaacatcttactatgaattataaatgttgatatccattcataaaattgtatttttgaacact |
593 |
Q |
| |
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||||| ||||| | || |||| ||||| | || ||| |||| |||||| |||||||||||| ||| ||| |||||||||| ||| |||||||||||||| |
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| T |
32548273 |
caaaatgctagcatgattgaacaacatattatctatccaaatatcttattatgaattataagtgtggatgcccattcataatattatatttttgaacact |
32548372 |
T |
|
| Q |
594 |
cacca |
598 |
Q |
| |
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||||| |
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| T |
32548373 |
cacca |
32548377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 43 - 243
Target Start/End: Original strand, 23482552 - 23482751
Alignment:
| Q |
43 |
tcaaaatatatagctaatgaaagatggagttcagacaatatagcccagaatacggccgtgcatgaagaagaggagtctgaagatgcaaccttgtcttaac |
142 |
Q |
| |
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|||||||||||||| |||| ||||||||| |||||| |||||||| ||| || || ||||||||| ||||||| || | ||| |||||||||||||| || |
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| T |
23482552 |
tcaaaatatatagccaatgtaagatggagatcagaccatatagcctagagtatggtcgtgcatgatgaagagg-gtttcaagctgcaaccttgtcttcac |
23482650 |
T |
|
| Q |
143 |
tacaaaagcaggatttgcgcacaagcaaacctgacaacaggtgaaggaaaccaaaatgattgtaaattcagttctgccacattcatgaatgtgccacagt |
242 |
Q |
| |
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||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||| ||||||| || ||||||||||||| ||||||||| |
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| T |
23482651 |
tacaaaaaaaggatttgtgcacaagcaaacctaacaacagctgaaggaaaccaaaatgactgtaacttcagttttgacacattcatgaatttgccacagt |
23482750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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