View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_31 (Length: 459)
Name: NF21553_low_31
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 77 - 442
Target Start/End: Original strand, 36934395 - 36934759
Alignment:
| Q |
77 |
aaagttttgccggaatttcatgcaagttttcgcttcggtttaggcctatagctgctatcttgtgtaaaggtctttgnnnnnnngccagtttgtttatcaa |
176 |
Q |
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| T |
36934395 |
aaagttttgccggaatttcatgcaagttttcgcttcggtttaggcctatagctgctatcttgtgtaaaggtctttgtttttttgccagtttgtt---caa |
36934491 |
T |
|
| Q |
177 |
caagttttcgtcgtcgcatttaaaattatgaaatgcttcctcaataaagatgcatagatttacgattcttttggagtaaaccattaattatgaatttctt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36934492 |
caagttttcgtcgtcgcatttaaaattatgaaatgcttcctcaataaagatgcatagatttacgattcttttggagtaaaccattaattatgaatttctc |
36934591 |
T |
|
| Q |
277 |
ataataatttacacgtgttagtgcagtaaatagagcggatagatggacaaggagggtccgtctaaacactagtatata--taaatgtatacagctgttac |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36934592 |
ataataatttacacgtgttagtgcagtaaatagagcggatagatggacaaggagtgcccgtctaaacactagtatatatgtaaatgtatacagctgttac |
36934691 |
T |
|
| Q |
375 |
agctattattcaaacaaagcaactagtttagttaagcctaaccttatcggtctatggtaccatgttgg |
442 |
Q |
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| T |
36934692 |
agctattattcaaacaaagcaactagtttagttaagcctaaccttatcggtctatggtaccatgttgg |
36934759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36934347 - 36934265
Alignment:
| Q |
1 |
aggacagaagtatgccctttatagtgacggactgatttgtattattattgcaaaggtcgccgtttgctcaagagccaaagttt |
83 |
Q |
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| T |
36934347 |
aggacagaagtatgccctttatagtgacggactgatttgtattattattgcaaaggtcgccgtttgctcaagagccaaagttt |
36934265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 77 - 440
Target Start/End: Original strand, 991664 - 992011
Alignment:
| Q |
77 |
aaagttttgccggaatttcatgcaagttttcgcttcggtttaggcctatagctgctatcttgtgtaaaggtctttgnnnnnnngccagtttgtttatcaa |
176 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |
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| T |
991664 |
aaagttttgccagaatttcatgcaagttttcgctttggtttaggcctatagctgctgtcttgtgtaaaggtctttgtttttttgccagtttgttcatcaa |
991763 |
T |
|
| Q |
177 |
caagttttcgtcgtc-------gcatttaaaattatgaaatgcttcctcaataaagatgcatagatttacgattcttttggagtaaaccattaattatga |
269 |
Q |
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| T |
991764 |
gcagttttcgtcggctttttctgcatttaaaattatgaaatgcttcctcaataaagatgcatagatttgccattattttggagtaaaccattaattaaga |
991863 |
T |
|
| Q |
270 |
atttcttataataatttacacgtgttagtgcagtaaatagagcggatagatggacaaggagggtccgtctaaacactagtatatataaatgtatacagct |
369 |
Q |
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| T |
991864 |
atttc---tcataatttacatgtgttagcgcaataaaaagagcagatagacgg----gga-------tgaaaacgctaatatatataaatgta------- |
991942 |
T |
|
| Q |
370 |
gttacagctattattcaaacaaagcaactagtttagttaagcctaaccttatcggtctatggtaccatgtt |
440 |
Q |
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| T |
991943 |
--tacagctattattcaaacaaagtaactagtttagttaagcctaaccttatcagtctatggcaccatgtt |
992011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 991612 - 991537
Alignment:
| Q |
5 |
cagaagtatgccctttatagtgacggactgatttgtattattattgcaaaggtcgccgtttgctcaagagccaaagttt |
83 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
991612 |
cagaagtatgccctttatagtgacggactgaattgtattattattgcaaaggt---catttgctcaagagccaaagttt |
991537 |
T |
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