View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_34 (Length: 455)
Name: NF21553_low_34
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 36934323 - 36934759
Alignment:
| Q |
1 |
actataaagggcatacttctgtcctaatactatttaggtattttattgtaatttttaaatcaactctgctagaaagttttgccggaatttcatgcaagtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36934323 |
actataaagggcatacttctgtcctaatactatttaggtattttgttgtaatttttaaatcaactctgctagaaagttttgccggaatttcatgcaagtt |
36934422 |
T |
|
| Q |
101 |
ttcgcttcggtttaggcctatagctgctatcttgtgtaaaggtctttgnnnnnnngccagtttgtttatcaacaagttttcgtcgtcgcatttaaaatta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36934423 |
ttcgcttcggtttaggcctatagctgctatcttgtgtaaaggtctttgtttttttgccagtttgtt---caacaagttttcgtcgtcgcatttaaaatta |
36934519 |
T |
|
| Q |
201 |
tgaaatgcttcctcaataaagatgcatagatttacgattcttttggagtaaaccattaattatgaatttcttataataatttacacgtgttagtgcagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36934520 |
tgaaatgcttcctcaataaagatgcatagatttacgattcttttggagtaaaccattaattatgaatttctcataataatttacacgtgttagtgcagta |
36934619 |
T |
|
| Q |
301 |
aatagagcggatagatggacaaggagggtccgtctaaacactagtatata--taaatgtatacagctgttacagctattattcaaacaaagcaactagtt |
398 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36934620 |
aatagagcggatagatggacaaggagtgcccgtctaaacactagtatatatgtaaatgtatacagctgttacagctattattcaaacaaagcaactagtt |
36934719 |
T |
|
| Q |
399 |
tagttaagcctaaccttatcggtctatggtaccatgttgg |
438 |
Q |
| |
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| T |
36934720 |
tagttaagcctaaccttatcggtctatggtaccatgttgg |
36934759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 991592 - 992011
Alignment:
| Q |
1 |
actataaagggcatacttctgtcctaatactatttaggtattttattgtaatttttaaatcaactctgctagaaagttttgccggaatttcatgcaagtt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
991592 |
actataaagggcatacttctgacctaatactatttaggtattttattgtaatttttaaatcaactctgctagaaagttttgccagaatttcatgcaagtt |
991691 |
T |
|
| Q |
101 |
ttcgcttcggtttaggcctatagctgctatcttgtgtaaaggtctttgnnnnnnngccagtttgtttatcaacaagttttcgtcgtc-------gcattt |
193 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||| | |||||| |
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| T |
991692 |
ttcgctttggtttaggcctatagctgctgtcttgtgtaaaggtctttgtttttttgccagtttgttcatcaagcagttttcgtcggctttttctgcattt |
991791 |
T |
|
| Q |
194 |
aaaattatgaaatgcttcctcaataaagatgcatagatttacgattcttttggagtaaaccattaattatgaatttcttataataatttacacgtgttag |
293 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| ||||||| | |||||||||| ||||||| |
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|
| T |
991792 |
aaaattatgaaatgcttcctcaataaagatgcatagatttgccattattttggagtaaaccattaattaagaatttc---tcataatttacatgtgttag |
991888 |
T |
|
| Q |
294 |
tgcagtaaatagagcggatagatggacaaggagggtccgtctaaacactagtatatataaatgtatacagctgttacagctattattcaaacaaagcaac |
393 |
Q |
| |
|
||| |||| ||||| |||||| || ||| | |||| ||| |||||||||||||| |||||||||||||||||||||| ||| |
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|
| T |
991889 |
cgcaataaaaagagcagatagacgg----gga-------tgaaaacgctaatatatataaatgta---------tacagctattattcaaacaaagtaac |
991968 |
T |
|
| Q |
394 |
tagtttagttaagcctaaccttatcggtctatggtaccatgtt |
436 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
991969 |
tagtttagttaagcctaaccttatcagtctatggcaccatgtt |
992011 |
T |
|
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