View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_low_35 (Length: 445)
Name: NF21553_low_35
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 10750628 - 10751046
Alignment:
| Q |
18 |
aggtttggtatgtcagagtttcatgatcttcaacaacattgttgttatgatgcataccattatggtaagacattattgtcgtgtgtttcttagtatgcca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10750628 |
aggtttggtatgtcagagtttcatgatcttcaacaacattgttgttatgatgcataccattatggtaagacattattgtcgtgtgtttcttagcatgcca |
10750727 |
T |
|
| Q |
118 |
aataagtgggagagaaagtggtttgtttatttgtg--ttttcaattgtgaatgagggaggctttggatggattaggttttaaacaaaataaagataggga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10750728 |
aataagtgggagagaaagtggtttgtttatttgtgtgttttcaattgtgaatgagggaggctttggatggattaggttttaaacaaaataaagataggga |
10750827 |
T |
|
| Q |
216 |
attaaggtttacatcatgaaggatgggcctagttgaggcattttacacatttgtttaataaaatatattttgttttttatacaaacactttgggtgttca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
10750828 |
attaaggtttacatcatgaaggatgggcctagttgaggcattttacacatttgtttaataaaatatattttgttttttatacaaatagtttgggtgttca |
10750927 |
T |
|
| Q |
316 |
ttaagggacatgagtagaactaacattattgttgcttctaatttgaagtctcatcatgcattagcattatatattgttttcattgtactatactctcttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10750928 |
ttaagggacatgagtagaactaacattattgttgcttctaatttgaagtctcatcatgcattagcattatatattgttttcattgtactatactctcttt |
10751027 |
T |
|
| Q |
416 |
gattctcaatgcatttctt |
434 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10751028 |
gattctcaatgcatttctt |
10751046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University