View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_37 (Length: 428)
Name: NF21553_low_37
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 10602305 - 10601910
Alignment:
| Q |
18 |
tatgaaagtgcattgtgattgatggagtgaataatcaaaattttggcacttagctcgtttaaatgaagnnnnnnnnnn-tcaatgattaaataatttaat |
116 |
Q |
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| T |
10602305 |
tatgaaagtgcattgtggttgatggagtgaataatcaaaattttggcacttagctcatttaaatgaagaaaaaaaaaaatcaatgattaaataatttaat |
10602206 |
T |
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| Q |
117 |
tacattcatgattttttatacatgtacatgtgacatcaattttcttatcctctaatgtgactttctcatttcaaaagaattactaaaactatgcttgaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
10602205 |
tacattcatgattttttatacatgtacatgtgacatcaattttcttatcctctaatgtgtctttctcatttcaaa-gaattactaaaactatgcttgaaa |
10602107 |
T |
|
| Q |
217 |
tctttaaatgtaaattaatgctcaagtaagatttt-ataggattaattaagttcatcaataaaatacacaatgaatttgaagacaaatcatgccaaataa |
315 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10602106 |
tctttaaatgtaaattaatgctcaagtaagatttttataggattaattcagttcatcaataaaatacacaatgaatttgaagacaaatcatgccaaataa |
10602007 |
T |
|
| Q |
316 |
atttttcatgcttatgagattaattagaaaagttatcttctaaactcaataggaacaatagtagctatattgtgtcatattcacactctttaagaat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10602006 |
atttttcatgcttatgagattaattagaaaagttatcttctaaactcaataggaacaatagtagctatattgtgtcatattcacactctttaagaat |
10601910 |
T |
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