View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_low_38 (Length: 425)
Name: NF21553_low_38
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 28887349 - 28887753
Alignment:
| Q |
11 |
tagttggtttaagggaaggaaaatgatatcccattcactttccccccaacaaaatgtgagtttttaatgtatatacattactcaatatataattatgact |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28887349 |
tagttggtttaagggaaggaaaatgatatcccattcacttttcccccaacaacatgtgagtttttaaagtatatacattactcaatatataattatgact |
28887448 |
T |
|
| Q |
111 |
tgtttgattgtgtttttgctttttagtatttgataactgtttgatgtctacctctnnnnnnnn-tgtttgatgtccagaaaatatttcaattgaaattat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28887449 |
tgtttgattgtgtttttgctttttagtatttgataattgtttgatgtctacctctaaaaaaaaatgtttgatgtctagaaaatatttcaattgaaattat |
28887548 |
T |
|
| Q |
210 |
taagtgaaacacataaatatctggtttattgttttttaataaagaaaattttagatgagttgagttttaaaatttaccagaggttagggtagactttaac |
309 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28887549 |
taagtgaaacacataaatatccgttttattgttttttaataatgaaaattttagatgagttgagttttaaaatttaccagaggttagggcagactttaac |
28887648 |
T |
|
| Q |
310 |
taaagaagtaagttatcacattaatagtgaaaattgaactcatacttttataagatatgagtcaactctttatcaattgaatcaacttatatttctaacg |
409 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
28887649 |
taaagaagtaatttatcacattaatagtgaaaattgaactcatacttttataagatatgagtcaactctttatcaactgaatcaacttatatttttaacg |
28887748 |
T |
|
| Q |
410 |
tctct |
414 |
Q |
| |
|
||||| |
|
|
| T |
28887749 |
tctct |
28887753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 28882341 - 28882411
Alignment:
| Q |
11 |
tagttggtttaagggaaggaaaatgatatcccattcac-tttccccccaacaaaatgtgagtttttaatgt |
80 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| |||||||||| ||||| | |||||||||||| |
|
|
| T |
28882341 |
tagttggtttaagggaagggaaatgatatctcattcacttttccccccattaaaatataagtttttaatgt |
28882411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University