View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_41 (Length: 416)
Name: NF21553_low_41
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_41 |
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| [»] scaffold0302 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 399
Target Start/End: Complemental strand, 1194188 - 1193802
Alignment:
| Q |
13 |
aatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatcccttgaacacgacggacgcaaaaatactgcaacagctac |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1194188 |
aatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatcccttgaacacgacggacgcaaaaatactgcaacagctac |
1194089 |
T |
|
| Q |
113 |
aaaaatagaactcggcagaactgcattatctacatagacgcctggatattctgttgccatccatttgtgatcatacttttgctaacaagttggctatttg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1194088 |
aaaaatagaactcggcagaactgcattatctacatagacgcctggatattctgttgccacccatttgtgatcatacttttgctaacaagttggctatttg |
1193989 |
T |
|
| Q |
213 |
attcgcttcctttttccatttccacatcacatattctatacttatcttacaacctttcaaccaatattttctgttgaacggacaattaaactgcaaaaac |
312 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1193988 |
atttgcttcctttttccatttccacatcacatattctatacttatcttacaacctttcaaccaatattttctgttgaatggacaattaaactgcaaaaac |
1193889 |
T |
|
| Q |
313 |
aatagccttaaattaagattcattttagtcttttaacccaattgatgttgcaaacatcggcttcatctcacacaatgaattcctcag |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1193888 |
aatagccttaaattaagattcattttagtcttttaacccaattgatgttgcaaacatcggcttcatctcacacaaagaattcctcag |
1193802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 245 - 399
Target Start/End: Original strand, 1236732 - 1236886
Alignment:
| Q |
245 |
attctatacttatcttacaacctttcaaccaatattttctgttgaacggacaattaaactgcaaaaacaatagccttaaattaagattcattttagtctt |
344 |
Q |
| |
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||||| |||| |||| | ||||||||||||||||||||||| |||| |||||| || |||||||||||||| |||||||| | |||||||||| || ||| |
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| T |
1236732 |
attctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaattgccttaaactcagattcatttgagcctt |
1236831 |
T |
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| Q |
345 |
ttaacccaattgatgttgcaaacatcggcttcatctcacacaatgaattcctcag |
399 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236832 |
ttaaaccaattgatgttgcaaacatcggcttcatctcacacaatgaattcctcag |
1236886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 245 - 399
Target Start/End: Complemental strand, 1183023 - 1182869
Alignment:
| Q |
245 |
attctatacttatcttacaacctttcaaccaatattttctgttgaacggacaattaaactgcaaaaacaatagccttaaattaagattcattttagtctt |
344 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||| ||||| |||| || |||||||||| ||| |||||||| | |||||| ||| |||||| |
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| T |
1183023 |
attctatacttctcctacaacctttcaaccaatattttcttttgaaaggaccgctagactgcaaaaagaattgccttaaactcagattcgtttgagtctt |
1182924 |
T |
|
| Q |
345 |
ttaacccaattgatgttgcaaacatcggcttcatctcacacaatgaattcctcag |
399 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
1182923 |
ttaaaccaattgatgttacaaacatcggcttcatctctcacaatgaattcctcag |
1182869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 245 - 353
Target Start/End: Complemental strand, 897709 - 897601
Alignment:
| Q |
245 |
attctatacttatcttacaacctttcaaccaatattttctgttgaacggacaattaaactgcaaaaacaatagccttaaattaagattcattttagtctt |
344 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| | |||||| | ||||| |||| |||||| |
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| T |
897709 |
attctatacttatcttacaacctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttatttgagtctt |
897610 |
T |
|
| Q |
345 |
ttaacccaa |
353 |
Q |
| |
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|||| |||| |
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| T |
897609 |
ttaaaccaa |
897601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 1183346 - 1183283
Alignment:
| Q |
13 |
aatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatccct |
76 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
1183346 |
aatatcaaccccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaactccct |
1183283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 1236472 - 1236609
Alignment:
| Q |
90 |
cgcaaaaatactgcaacagctacaaaaatagaactcggcagaactgcattatctacatagacgcctggatattctgttgccatccatttgtgatcatact |
189 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||| ||||| ||||||||||||||| | ||| ||||||| ||| ||||||| ||||||| | | |
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| T |
1236472 |
cgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgtgatccttca |
1236571 |
T |
|
| Q |
190 |
tttgctaacaagttggctatttgattcgcttccttttt |
227 |
Q |
| |
|
||| |||||||| |||||||||||| ||||||||||| |
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| T |
1236572 |
tttattaacaagtcggctatttgattggcttccttttt |
1236609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 1236371 - 1236433
Alignment:
| Q |
13 |
aatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatccc |
75 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||| |
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|
| T |
1236371 |
aatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactccc |
1236433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 263 - 398
Target Start/End: Complemental strand, 20184 - 20050
Alignment:
| Q |
263 |
aacctttcaaccaatattttctgttgaacggacaattaaactgcaaaaacaatagccttaaattaagattcattttagtcttttaacccaattgatgttg |
362 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| || || |||||||||||||| |||||||| | |||||||||| |||||||||| ||||||||||| |
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|
| T |
20184 |
aacctttcaaccaatatttatt-ttgaaaggaaaactagactgcaaaaacaattgccttaaactcagattcatttgagtcttttaaaccaattgatgtca |
20086 |
T |
|
| Q |
363 |
caaacatcggcttcatctcacacaatgaattcctca |
398 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||||| |
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|
| T |
20085 |
caaacatcagcttcatctctcacaatgaaatcctca |
20050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 20534 - 20472
Alignment:
| Q |
13 |
aatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatccc |
75 |
Q |
| |
|
||||||||| ||||||||| | | |||||||||||| |||||||||||||||||||||||||| |
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|
| T |
20534 |
aatatcaactccaactatgttactgccagcaaactgtataggaccaccagaaggaaaaatccc |
20472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 20405 - 20295
Alignment:
| Q |
114 |
aaaatagaactcggcagaactgcattatctacatagacgcctggatattctgttgccatccatttgtgatcatacttttgctaacaagttggctatttga |
213 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||| || ||| |||||||| |||||||| || || ||| ||||||| ||||| ||| || ||||||| |
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| T |
20405 |
aaaacagaactcggcagacctgcattatccacattgaaacctagatattctattgccatcagttcgtaatcctacttttactaacgagtcggttatttga |
20306 |
T |
|
| Q |
214 |
ttcgcttcctt |
224 |
Q |
| |
|
|| |||||||| |
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|
| T |
20305 |
ttagcttcctt |
20295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 12857445 - 12857383
Alignment:
| Q |
13 |
aatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatccc |
75 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
12857445 |
aatatcaactccaactatgctgctgtcagcaaattgcataggaccactagaaggaaaaatccc |
12857383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 396
Target Start/End: Original strand, 20256866 - 20256934
Alignment:
| Q |
328 |
agattcattttagtcttttaacccaattgatgttgcaaacatcggcttcatctcacacaatgaattcct |
396 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||||| || ||||||| |||||||| |||| |
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| T |
20256866 |
agattcatttgagtcttttaagccaattgatgtcccaaacatcagcctcatctctaacaatgaaatcct |
20256934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 20256470 - 20256510
Alignment:
| Q |
13 |
aatatcaacaccaactatgctgcagccagcaaactgcatag |
53 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||||||||||| |
|
|
| T |
20256470 |
aatatcaactccaactatgttgcagccaacaaactgcatag |
20256510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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