View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_42 (Length: 415)
Name: NF21553_low_42
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_42 |
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| [»] scaffold0361 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 41569875 - 41570278
Alignment:
| Q |
17 |
ttttcaatcttaatggcctcttccctttcagtcaagcgttttctctcctccggccttctcttgaactctcttcttcgtcccgctgcct---------ccc |
107 |
Q |
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| T |
41569875 |
ttttcaatcttaatggcctcttccctttcagtcaagcgttttctctcctccggccttctctcaaactctcttcttcgtcccgccgcctcttccgcctccc |
41569974 |
T |
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| Q |
108 |
gctcattcaacaccagcgccatgcgccagtacgatgaactcttcgatgacagcaacatcatggacgctgtttgtcgcccttccttttctggtacttgtta |
207 |
Q |
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| T |
41569975 |
gctcattcaacaccagcgccatgcgccagtacgatgaactcttcgatgacagcaacatcatggacgctgtttgtcgcccttccttttctggtacttgtta |
41570074 |
T |
|
| Q |
208 |
tcacttgtaaaattgtttcattctaaccctaacaaaaatataactattcaatttcaatctatattttgattaacaaatacttaactttatctttctttcc |
307 |
Q |
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| T |
41570075 |
tcacttgtaaaattgtttcattctaaccctaacaaaaatataactattcaatttcaatctatattttgattaacaaatacttaactttatttttctttcc |
41570174 |
T |
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| Q |
308 |
tgtttta-ttgttagatgtgttcgatccgttttcttctactaggagcttgaaccatgtctttaacatggtggatcaatcaattaacaatccgttcctctc |
406 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41570175 |
tgttttattttttagatgtgttcgatccgttttcttctactaggagcttgaaccatgtccttaacatggtggatcaatcaattaacaatccgttcctctc |
41570274 |
T |
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| Q |
407 |
tgct |
410 |
Q |
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| T |
41570275 |
tgct |
41570278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 410
Target Start/End: Complemental strand, 9193 - 9101
Alignment:
| Q |
318 |
ttagatgtgttcgatccgttttcttctactaggagcttgaaccatgtctttaacatggtggatcaatcaattaacaatccgttcctctctgct |
410 |
Q |
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| T |
9193 |
ttagatgtgtttgatccgttttctccaactaggagtttgagccaggtgcttaacatggtggatcaattaatggacaatccattcctttctgct |
9101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 246482 - 246534
Alignment:
| Q |
104 |
tcccgctcattcaacaccagcgccatgcgccagtacgatgaactcttcgatga |
156 |
Q |
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| T |
246482 |
tcccgttcattcaacaccaacgccatgcgccagtacgacgaacgctccgatga |
246534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 98174 - 98216
Alignment:
| Q |
104 |
tcccgctcattcaacaccagcgccatgcgccagtacgatgaac |
146 |
Q |
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| T |
98174 |
tcccgttcattcaacaccaacgccatgcgccagtacgacgaac |
98216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 19769276 - 19769314
Alignment:
| Q |
104 |
tcccgctcattcaacaccagcgccatgcgccagtacgat |
142 |
Q |
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| T |
19769276 |
tcccgttcattcaacaccaacgccatgcgccagtacgat |
19769314 |
T |
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