View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_46 (Length: 383)
Name: NF21553_low_46
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_46 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 40356315 - 40356688
Alignment:
| Q |
10 |
aagcatagggttcagtggtaaagaactgcacatagaaaacagctgtgatgtaaatatgttacatctcaaatgcatggtggtgaacatagagcgatcactc |
109 |
Q |
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| T |
40356315 |
aagcatagggttcagtggtaaagaactgcacatagaaaacagctgtgatgtaaatatgttacatctcaaatgcatggtggcgaacatagagcgatcactc |
40356414 |
T |
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| Q |
110 |
acctcactaatcagagcagaagaggtagttccgcgatcatcaggatctattgcaagaagagttccaattaaaggtaatgaagaaggtggaaaaacagcaa |
209 |
Q |
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| T |
40356415 |
acctcactaatcagagcagaagaggtagttccgcggtcatcaggatctattgcaagaagagttccaattaaaggtaatgaagaaggtggaaaaacagcaa |
40356514 |
T |
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| Q |
210 |
atgcttctgaaatgcgccttttataaggttgctgtggcttaaaaagagtagcgtttggcaatctatatttcttccaatattcctcagatggagagccaca |
309 |
Q |
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| T |
40356515 |
atgcttctgaaatgcgccttttataaggttgctgtggcttaaaaagagtagcgtttggcaatctatatttcttccaatattcctcagatggagagccaca |
40356614 |
T |
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| Q |
310 |
taacttaaatattttgtgaagttgctcaacctaggtccaaaattccaaaaattagttacatacttacatatcat |
383 |
Q |
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| T |
40356615 |
taacttaaatattttgtgaagttgctcaacctaggtccaaaattccaaaaattagttacatacttacatatcat |
40356688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 343
Target Start/End: Original strand, 45248202 - 45248393
Alignment:
| Q |
152 |
ggatctattgcaagaagagttccaattaaaggtaatgaagaaggtggaaaaacagcaaatgcttctgaaatgcgccttttataaggttgctgtggcttaa |
251 |
Q |
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| T |
45248202 |
ggatctattgcaagaagactgtcaattagaggtagtgaagatggaggaaaatccttgaatgtttctgagatacagcgtttatatggctgttgcggcttaa |
45248301 |
T |
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| Q |
252 |
aaagagtagcgtttggcaatctatatttcttccaatattcctcagatggagagccacataacttaaatattttgtgaagttgctcaacctag |
343 |
Q |
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| T |
45248302 |
agattgtagcgtttggcaatttatgcttccgccaatattcctcagctggagagccacacaacttaaaaattttgtgcagttgttcaacctag |
45248393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 45248060 - 45248121
Alignment:
| Q |
10 |
aagcatagggttcagtggtaaagaactgcacatagaaaacagctgtgatgtaaatatgttacatct |
75 |
Q |
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| T |
45248060 |
aagcatagggctcggtggtaaaaaactgcaaatagaaaacagatgtg----aaatatgttacatct |
45248121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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