View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_49 (Length: 363)
Name: NF21553_low_49
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 53695214 - 53694906
Alignment:
| Q |
17 |
ataaaataatctaacaatttctcattcgacatcaaacccggcagctggccgctaatgccattcgtgctttaatttcaagaacatactccttaagtctctc |
116 |
Q |
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| T |
53695214 |
ataaaataatctaacaatttctcattcgacatcaaacctgaccgttggccgctaatgccattcgtgctttaatttcaagaacatactccttaagtctctc |
53695115 |
T |
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| Q |
117 |
accatgtctgatcattgtgagccacccgactatatatgcttcccgtttatccccaaaacgcataatctatttaagccattgtgagtctttcctaagaacc |
216 |
Q |
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| T |
53695114 |
accatgtctgatcattgtgagccaccggactatatatgcttcccgtttatccccaaaacgcataatctatttaagccatcgtgagtctttcctaagaacc |
53695015 |
T |
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| Q |
217 |
acttgggttattcggtctccagaaattgaaaagggtgaaatgctatgccttccaattgcaatttttgtctactaagtttttgcatttagaggaaaaatat |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53695014 |
acttgggttattcggtctcctgaaattgaaaagggtgaaatgctatgccttccaattgcaatttttgtctactaagtttttgcatttagaggaaaaatat |
53694915 |
T |
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| Q |
317 |
ctacacttg |
325 |
Q |
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||||||||| |
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| T |
53694914 |
ctacacttg |
53694906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 354
Target Start/End: Complemental strand, 53694803 - 53694772
Alignment:
| Q |
323 |
ttgggtctgagaaagttgtgcaactccctatg |
354 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
53694803 |
ttgggtctgagaaagttgtgcaactccctatg |
53694772 |
T |
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