View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_50 (Length: 361)
Name: NF21553_low_50
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 35 - 343
Target Start/End: Original strand, 12079648 - 12079956
Alignment:
| Q |
35 |
aggttaggaaggaggcggaaaatgagggtctcgaggtaaggtagatcagcgatgaggggcgggattgtaccgacaagatcatcagcgccatctatctcaa |
134 |
Q |
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| T |
12079648 |
aggttaggtaggaggcgtaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcggtattgtaccgacaagatcatcagcaccatctatctcaa |
12079747 |
T |
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| Q |
135 |
ggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgtttgggatccaggttgagaagaggct |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12079748 |
ggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgtgtgggatccaggttgagaagaggct |
12079847 |
T |
|
| Q |
235 |
tgtattgtggaagtaatatttgatcttgaggaggactttttcgtcgtctgggtggcagaggcgtgggcgtggtggtggagaaagagagaaggttaaggaa |
334 |
Q |
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| T |
12079848 |
tgtattgtggaagtaatctttgatcttgaggaggactttttcgtcgtctgggtggcagaggcgtgggcgtggtggtggagaaagagagaaggttaaggaa |
12079947 |
T |
|
| Q |
335 |
gggaggaag |
343 |
Q |
| |
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||||||||| |
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| T |
12079948 |
gggaggaag |
12079956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 35 - 343
Target Start/End: Original strand, 12096288 - 12096599
Alignment:
| Q |
35 |
aggttaggaaggaggcggaaaatgagggtctcgaggtaaggtagatcagcgatgaggggcgggattgtaccgacaagatcatcagcgccatctatctcaa |
134 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096288 |
aggttagggaggaggcgaaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcgggattgtaccgacaagatcatcagcgccatctatctcaa |
12096387 |
T |
|
| Q |
135 |
ggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgtttgggatccaggttgagaagaggct |
234 |
Q |
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| T |
12096388 |
ggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgtgtgggatccaggttgagaagaggct |
12096487 |
T |
|
| Q |
235 |
tgtattgtggaagtaatatttgatcttgaggaggactttttcgtcgtctgggtggcagaggcgtgggcgtggtggtggagaa---agagagaaggttaag |
331 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| |||||| |
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| T |
12096488 |
tgtattgtggaagtaatctttgatcttgaggaggactttttcgtcgtctgggtggcagaggtttgggcgtggtggtgaagaaattagagagaaagttaag |
12096587 |
T |
|
| Q |
332 |
gaagggaggaag |
343 |
Q |
| |
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|||||||||||| |
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| T |
12096588 |
gaagggaggaag |
12096599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 34 - 343
Target Start/End: Complemental strand, 1248979 - 1248670
Alignment:
| Q |
34 |
gaggttaggaaggaggcggaaaatgagggtctcgaggtaaggtagatcagcgatgaggggcgggattgtaccgacaagatcatcagcgccatctatctca |
133 |
Q |
| |
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||||||||| ||| |||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| |||||||| || |||||||| || || ||||| |
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| T |
1248979 |
gaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtggggggatcgtaccgacgaggtcatcagcaccgtcgatctcg |
1248880 |
T |
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| Q |
134 |
aggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgtttgggatccaggttgagaagaggc |
233 |
Q |
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|||||||||||||| | ||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
1248879 |
aggaagttgacacggtagattgttgtttttgggattttcttgcataagactatgcgccatttgcaacaatctgtttttggagtccaggttgagaagaggc |
1248780 |
T |
|
| Q |
234 |
ttgtattgtggaagtaatatttgatcttgaggaggactttttcgtcgtctgggtggcagaggcgtgggcgtggtggtggagaaagagagaaggttaagga |
333 |
Q |
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||||||||||||| | | |||||| ||||||||||||||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
1248779 |
ttgtattgtggaaatggtctttgattttgaggaggactttttcgtcgtcggggtggcagtggtgtcggcgtggtggtggagaaagagagaaggttaagga |
1248680 |
T |
|
| Q |
334 |
agggaggaag |
343 |
Q |
| |
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||||||||| |
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|
| T |
1248679 |
ggggaggaag |
1248670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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