View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_low_51 (Length: 358)
Name: NF21553_low_51
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 25 - 343
Target Start/End: Original strand, 35428819 - 35429137
Alignment:
| Q |
25 |
atatatatatcaaaatttaatattttcctgattgagggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
124 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35428819 |
atatatatttcaaaaattaatactttcctgatcgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
35428918 |
T |
|
| Q |
125 |
tggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaaccatcaccaaaaggcaaattac |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35428919 |
tggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaatcatcaccaaaaggcaaattac |
35429018 |
T |
|
| Q |
225 |
ttttctacttctacctcatacttacttcaaagcttgatcactcattcatggagtcctcctcctttgacctaactgtgactcccatccttaaaccaatcca |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35429019 |
ttttctacttctacctcatacttacttcaaagcttgatcactcattcatggagtcctcctcctttgacctaactgtgactcccatccttaaaccaatcca |
35429118 |
T |
|
| Q |
325 |
acccctgtcactagaaaat |
343 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35429119 |
acccctgtcactagaaaat |
35429137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 25 - 343
Target Start/End: Original strand, 35419686 - 35419998
Alignment:
| Q |
25 |
atatatatatcaaaatttaatattttcctgattgagggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
124 |
Q |
| |
|
|||||||| |||| | |||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35419686 |
atatatatttcaataattaatacttccctgatagaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
35419785 |
T |
|
| Q |
125 |
tggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaaccatcaccaaaaggcaaattac |
224 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | ||||||||||||||| |
|
|
| T |
35419786 |
tggacaaaacattattagggttat-aacctacttaaactcttccaaaattttgcctataaatgcattgtatagcaaaatcatgagcaaaaggcaaattac |
35419884 |
T |
|
| Q |
225 |
ttttctacttctacctcatacttacttcaaagcttgatcactcattcatggagtcctcctcctttgacctaactgtgactcccatccttaaaccaatcca |
324 |
Q |
| |
|
||||| | | ||| | | ||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
35419885 |
--ttctaagtgtgtctccaa--tcctt-aaagcttgatcactcatacatggagtcctcctcctttgacctaagtgtgtctccaatccttaaaccaatcca |
35419979 |
T |
|
| Q |
325 |
acccctgtcactagaaaat |
343 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
35419980 |
acccctgtcaccagaaaat |
35419998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University