View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_53 (Length: 345)
Name: NF21553_low_53
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 59 - 328
Target Start/End: Original strand, 36934488 - 36934759
Alignment:
| Q |
59 |
tcaacaagttttcgtcgtcgcatttaaaattatgaaatgcttcctcaataaagatgcatagatttacgattcttttggagtaaaccattaattatgaatt |
158 |
Q |
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| T |
36934488 |
tcaacaagttttcgtcgtcgcatttaaaattatgaaatgcttcctcaataaagatgcatagatttacgattcttttggagtaaaccattaattatgaatt |
36934587 |
T |
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| Q |
159 |
tcttataataatttacacgtgttagtgcagtaaatagagcggatagatggacaaggagggtccgtctaaacactagtatata--taaatgtatacagctg |
256 |
Q |
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| T |
36934588 |
tctcataataatttacacgtgttagtgcagtaaatagagcggatagatggacaaggagtgcccgtctaaacactagtatatatgtaaatgtatacagctg |
36934687 |
T |
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| Q |
257 |
ttacagctattattcaaacaaagcaactagtttagttaagcctaaccttatcggtctatggtaccatgttgg |
328 |
Q |
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| T |
36934688 |
ttacagctattattcaaacaaagcaactagtttagttaagcctaaccttatcggtctatggtaccatgttgg |
36934759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36934323 - 36934290
Alignment:
| Q |
1 |
tgacggactgatttgtattattattgcaaaggtc |
34 |
Q |
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| T |
36934323 |
tgacggactgatttgtattattattgcaaaggtc |
36934290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 78 - 326
Target Start/End: Original strand, 991786 - 992011
Alignment:
| Q |
78 |
gcatttaaaattatgaaatgcttcctcaataaagatgcatagatttacgattcttttggagtaaaccattaattatgaatttcttataataatttacacg |
177 |
Q |
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| T |
991786 |
gcatttaaaattatgaaatgcttcctcaataaagatgcatagatttgccattattttggagtaaaccattaattaagaatttc---tcataatttacatg |
991882 |
T |
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| Q |
178 |
tgttagtgcagtaaatagagcggatagatggacaaggagggtccgtctaaacactagtatatataaatgtatacagctgttacagctattattcaaacaa |
277 |
Q |
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|||||| ||| |||| ||||| |||||| || ||| | |||| ||| |||||||||||||| |||||||||||||||||||| |
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| T |
991883 |
tgttagcgcaataaaaagagcagatagacgg----gga-------tgaaaacgctaatatatataaatgta---------tacagctattattcaaacaa |
991962 |
T |
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| Q |
278 |
agcaactagtttagttaagcctaaccttatcggtctatggtaccatgtt |
326 |
Q |
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|| |||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
991963 |
agtaactagtttagttaagcctaaccttatcagtctatggcaccatgtt |
992011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 991592 - 991559
Alignment:
| Q |
1 |
tgacggactgatttgtattattattgcaaaggtc |
34 |
Q |
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| T |
991592 |
tgacggactgaattgtattattattgcaaaggtc |
991559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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