View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_low_57 (Length: 335)
Name: NF21553_low_57
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_57 |
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| [»] scaffold1801 (1 HSPs) |
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| [»] scaffold1118 (1 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 9884219 - 9883910
Alignment:
| Q |
13 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatgtacaatttatttgatc--------acatggtaaaaaactgaagagaaacta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9884219 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatgtacaatttatttgatcctttcctaacatggtaaaaaactgaagagaaactg |
9884120 |
T |
|
| Q |
105 |
tataattgcatacttgatctctgttaataatccattcaaattatagtcattgcatcttagaggaagtatacataagtggttggcagatagcatctcagaa |
204 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9884119 |
tataattgcatacttgatctctgttaataatccattcaaattatagtcattgcatcttagaggaagtatacataagtggttggcagatagcatctcagaa |
9884020 |
T |
|
| Q |
205 |
aattgatgtgcagttttaaacctcgtggtttcaatttgacacttttcattcccagtaacctttttctctttgttaggactttcaagtataattgctttgt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9884019 |
aattgatgtgcagttttaaacctcgtggtttcaatttgacacttttcattcccagtaacctttttctctttgttaggactttcaagtataattgctttgt |
9883920 |
T |
|
| Q |
305 |
ctatatgaat |
314 |
Q |
| |
|
|||||||||| |
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|
| T |
9883919 |
ctatatgaat |
9883910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 20421707 - 20422018
Alignment:
| Q |
13 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatgtacaatttatttgatc--------acatggtaaaaaactgaagagaaacta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
20421707 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatgtacaatttatttgatcctttcctaacatagtaaaaaactgaagagaaactg |
20421806 |
T |
|
| Q |
105 |
tataattgcatacttgatctctgttaataatccattcaaattatagtcattgcatcttagaggaagtatacataagtggttggcagatagcatctcagaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20421807 |
tataattgcatacttgatctctgttaataatccattcaaattatagtcattgcatcttagaggaagtatacataagtggttggcagatagcatctcagaa |
20421906 |
T |
|
| Q |
205 |
aattgatgtgcagttttaaacctcgtggtttcaatttgacacttttcattcccagtaacctttttctctttgttaggactttcaagtataattgctttgt |
304 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20421907 |
aattgatgtgcagttttaaacctcgtggtttcaatttgacacttttcattcccagtaacctttttctctttgttaggactttcaagtataattgctttgt |
20422006 |
T |
|
| Q |
305 |
ctatatgaatga |
316 |
Q |
| |
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| ||||||||| |
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|
| T |
20422007 |
ttgtatgaatga |
20422018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 15607528 - 15607744
Alignment:
| Q |
13 |
aatatcttaaactccttgcttttgcccctaatcagaatttt--aaatgatgtacaatttatttgatc---acatggtaaaaaactgaa-gagaaactata |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||||||||| || ||||||||||| |
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| T |
15607528 |
aatatcttgaactccttgcttttgcccctaatcagaatttttaaaatgatgta-----tatttgatcctaacatagtaaaaaactaaaagagaaactata |
15607622 |
T |
|
| Q |
107 |
taattgcatacttgatctctgttaataatccattcaaattatagtcattgcatcttagaggaagtatacataagtggttggcagatagcatctcagaaaa |
206 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |||| |||||||||| |
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|
| T |
15607623 |
taattgcatacttgatctctgttaataatccattcaaattatagttattgcatcttagaggaagtattgaaaagtggttggcaggtagcttctcagaaaa |
15607722 |
T |
|
| Q |
207 |
ttgatgtgcagttttaaacctc |
228 |
Q |
| |
|
| |||||||||||||||||||| |
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|
| T |
15607723 |
tcgatgtgcagttttaaacctc |
15607744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 15607747 - 15607795
Alignment:
| Q |
258 |
agtaacctttttctctttgttaggactttcaagtataattgctttgtct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15607747 |
agtaacctttttctctttgttaggactttcaagtacaattgctttgtct |
15607795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 1027 - 1075
Alignment:
| Q |
13 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatg |
61 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1027 |
aatatcttgaagtccttgcttttgcccctgatcagaattttaaatgatg |
1075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 2023 - 1976
Alignment:
| Q |
13 |
aatatcttaaactccttgcttttgcccctaatcagaattttaaatgatg |
61 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||| |||||||||||||| |
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| T |
2023 |
aatatcttcaagtccttgcttttgccc-taatcataattttaaatgatg |
1976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 1798 - 1766
Alignment:
| Q |
25 |
tccttgcttttgcccctaatcagaattttaaat |
57 |
Q |
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||||||||||||| ||||||||||||||||||| |
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|
| T |
1798 |
tccttgcttttgctcctaatcagaattttaaat |
1766 |
T |
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