View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_low_6 (Length: 681)

Name: NF21553_low_6
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_low_6
NF21553_low_6
[»] chr5 (15 HSPs)
chr5 (13-661)||(36202711-36203358)
chr5 (330-508)||(29006218-29006398)
chr5 (28-164)||(9851275-9851410)
chr5 (318-437)||(9851621-9851740)
chr5 (348-504)||(11042983-11043139)
chr5 (26-93)||(2022648-2022715)
chr5 (20-93)||(43378120-43378193)
chr5 (162-315)||(29006450-29006603)
chr5 (367-421)||(15205202-15205256)
chr5 (56-138)||(29006661-29006743)
chr5 (178-315)||(9851458-9851594)
chr5 (81-164)||(15205483-15205566)
chr5 (167-235)||(9080655-9080724)
chr5 (327-360)||(28270773-28270806)
chr5 (404-506)||(28274093-28274197)
[»] chr8 (7 HSPs)
chr8 (338-512)||(12729135-12729309)
chr8 (317-506)||(28696261-28696450)
chr8 (168-327)||(12729344-12729502)
chr8 (26-164)||(28695947-28696085)
chr8 (61-164)||(12729541-12729644)
chr8 (26-93)||(25953607-25953674)
chr8 (32-164)||(44729228-44729364)
[»] chr3 (14 HSPs)
chr3 (318-507)||(52653523-52653712)
chr3 (14-164)||(52653924-52654075)
chr3 (157-326)||(52653728-52653896)
chr3 (164-306)||(33709804-33709945)
chr3 (367-507)||(50914636-50914776)
chr3 (318-504)||(33709572-33709752)
chr3 (14-164)||(33709981-33710129)
chr3 (167-327)||(40574317-40574477)
chr3 (343-438)||(16729628-16729721)
chr3 (21-107)||(16729894-16729980)
chr3 (460-509)||(23686022-23686071)
chr3 (460-509)||(24058259-24058308)
chr3 (434-506)||(2257449-2257521)
chr3 (24-96)||(29827115-29827187)
[»] chr2 (7 HSPs)
chr2 (334-509)||(34681294-34681469)
chr2 (328-487)||(14219075-14219233)
chr2 (20-78)||(42779878-42779936)
chr2 (329-393)||(14891583-14891647)
chr2 (20-94)||(716045-716118)
chr2 (25-78)||(16272130-16272183)
chr2 (179-255)||(34681118-34681195)
[»] chr4 (22 HSPs)
chr4 (317-507)||(24129520-24129710)
chr4 (317-501)||(48780039-48780222)
chr4 (334-473)||(1516526-1516664)
chr4 (340-506)||(20251147-20251312)
chr4 (326-477)||(1494959-1495110)
chr4 (413-506)||(122829-122922)
chr4 (26-96)||(3415597-3415667)
chr4 (15-96)||(3425145-3425227)
chr4 (342-416)||(1533060-1533134)
chr4 (26-96)||(18736848-18736918)
chr4 (21-93)||(18670524-18670597)
chr4 (56-137)||(48779718-48779799)
chr4 (167-250)||(20251439-20251523)
chr4 (24-94)||(30020297-30020367)
chr4 (338-404)||(46324378-46324444)
chr4 (14-106)||(20251618-20251710)
chr4 (430-477)||(1533134-1533180)
chr4 (162-285)||(24391830-24391951)
chr4 (47-94)||(32429731-32429778)
chr4 (26-96)||(18716175-18716245)
chr4 (14-161)||(24129144-24129292)
chr4 (24-72)||(47071118-47071166)
[»] chr7 (12 HSPs)
chr7 (326-501)||(12239809-12239983)
chr7 (14-164)||(12239438-12239590)
chr7 (319-513)||(1840394-1840589)
chr7 (14-133)||(37469058-37469178)
chr7 (14-164)||(24870567-24870718)
chr7 (326-488)||(24870206-24870367)
chr7 (168-323)||(12239628-12239782)
chr7 (35-96)||(5436975-5437036)
chr7 (326-401)||(1829807-1829883)
chr7 (379-451)||(24533212-24533284)
chr7 (318-478)||(34091651-34091806)
chr7 (14-95)||(23756987-23757068)
[»] chr6 (7 HSPs)
chr6 (318-504)||(28612324-28612508)
chr6 (32-93)||(28611983-28612044)
chr6 (162-321)||(28612144-28612303)
chr6 (168-250)||(11931984-11932066)
chr6 (81-164)||(11932104-11932187)
chr6 (14-96)||(24075623-24075706)
chr6 (38-93)||(21937271-21937326)
[»] chr1 (16 HSPs)
chr1 (168-328)||(49053745-49053905)
chr1 (14-164)||(49061524-49061674)
chr1 (26-164)||(49053944-49054081)
chr1 (162-328)||(49061325-49061491)
chr1 (334-507)||(49053554-49053713)
chr1 (26-96)||(21432110-21432180)
chr1 (26-96)||(44524463-44524533)
chr1 (14-96)||(35624693-35624776)
chr1 (334-508)||(49061133-49061293)
chr1 (330-445)||(17458230-17458345)
chr1 (35-94)||(48366498-48366557)
chr1 (329-491)||(50059269-50059430)
chr1 (35-96)||(29681289-29681350)
chr1 (318-392)||(10917398-10917470)
chr1 (318-365)||(52282180-52282226)
chr1 (20-96)||(43358433-43358510)
[»] scaffold0007 (4 HSPs)
scaffold0007 (317-508)||(217508-217689)
scaffold0007 (329-501)||(215646-215816)
scaffold0007 (168-321)||(217708-217861)
scaffold0007 (35-96)||(217956-218017)


Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 13 - 661
Target Start/End: Complemental strand, 36203358 - 36202711
Alignment:
Q  13 cagaacctgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36203358 cagaacctatgttggggtctgctgtaataacttcatcaagaagatgatgaagatgaacataatgaattgtgcacataaatttcatggcgtgtgtgggcca 36203259  T
Q  113 cactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaat 212  Q
    ||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  36203258 cactaacctttaagttcgattcgtccccaccagttatgccaaccggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatctgcaat 36203159  T
Q  213 ggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaataatttagtataattatcggcagaatttagactcaaaacaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||    
T  36203158 ggtagcttacaaaataaagttctgacaaattctctcgtacac-taaagaagagaacgaataatttagtataattttcggcagaatttagactcacaccaa 36203060  T
Q  313 tgtaattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattac 412  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36203059 tgtgattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatggttac 36202960  T
Q  413 attgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaattaat 512  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  36202959 attgattcaattgtcaagcattacaccttttctctaaaaggtctctttttaaccattgcaacttttcaaatatattttaaaaatttctctcacaattaat 36202860  T
Q  513 acaccaatgttcatgtgtctgtttgtacaattttcttatgcgttcaattgcatataaaggagatgtcatttctgtgttgccaagaacaaacggctaaaat 612  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  36202859 acaccaatgttcatgtgtctggttgtacgattttcttatgtgttcaattgtatataaaggagatgtcatttctgtgttgccaagaacaaacggctaaaaa 36202760  T
Q  613 gatgataacaactttgtggcgagtatatttaaacggttgctatctttca 661  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36202759 gatgataacaactttgtggcaagtatatttaaacggttgctatctttca 36202711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 330 - 508
Target Start/End: Complemental strand, 29006398 - 29006218
Alignment:
Q  330 aaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaa 429  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| |||||||| |||| | || ||    
T  29006398 aaagtgtctctatttatagagaaacttatgtcatttggtgaagggaaacaaccctttaaaagattttgttcatgaatggttacattgcttcaatcgtaaa 29006299  T
Q  430 gcattacaccttttct---ctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 508  Q
     |||||||| |||| |   ||||||| | |||||| ||  |||||||||||| || ||||||||| ||||||||||||||||    
T  29006298 acattacacttttttttttctaaaagatctctttt-aattattgcaacttttcaattatattttggaaatttctctcacaat 29006218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 9851275 - 9851410
Alignment:
Q  28 ggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagt 127  Q
    |||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||  ||||||||||| ||||||||| |||| ||    
T  9851275 ggtctgctgcaataacttgatcaaaaagatgatgaagatgaacatgatgaattgtgcacataaattccaaagcgtgtgtgggacacactaacatttaggt 9851374  T
Q  128 tcgattcgccctcaccagttatgcaaaccggatgcaa 164  Q
    || |||| |||| |||||||| || ||||| ||||||    
T  9851375 tcaattctccct-accagttaagccaaccgaatgcaa 9851410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 318 - 437
Target Start/End: Original strand, 9851621 - 9851740
Alignment:
Q  318 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 417  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| ||| | |||||||||| ||||||| | | ||||     
T  9851621 ttttctgcctccaaaatgtctctatttacagagaaacttatgtcttttggtgaagagaaataaccatttgacagagtttgtttatgaatggtcagattgc 9851720  T
Q  418 ttcagttgtcaagcattaca 437  Q
    |||| |||||||||| ||||    
T  9851721 ttcaattgtcaagcaataca 9851740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 348 - 504
Target Start/End: Original strand, 11042983 - 11043139
Alignment:
Q  348 gagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacaccttttctct 447  Q
    |||||||| ||||| ||||||| ||| ||  |||||||| ||||||||||||||||||||  || ||||||| | | | ||| |||||||||||||||||    
T  11042983 gagaaactcatgtcctttggtgtagataatcaaccctttgaaagagtttgttcatgaatggctagattgattaaatggacaaacattacaccttttctct 11043082  T
Q  448 aaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 504  Q
    ||||| | | | |||||||  || ||||||| |||||||||||||||||||| ||||    
T  11043083 aaaagatctttatttaaccgatgaaacttttcaaatatattttgaaaatttcactca 11043139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 2022648 - 2022715
Alignment:
Q  26 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 93  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  2022648 ggggtctgctgcaataacttgatcaagaagatgatgaagatgaacatgatgaaatgtgcacataaatt 2022715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 43378120 - 43378193
Alignment:
Q  20 tgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 93  Q
    |||||||||||||||||||||||||| | || ||| |||||||||||||| || ||||| ||||||||||||||    
T  43378120 tgtgttggggtctgctgcaataacttgaccatgaagatgatgaagatgaatatgatgaagtgtgcacataaatt 43378193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 315
Target Start/End: Complemental strand, 29006603 - 29006450
Alignment:
Q  162 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagctt-acaaaataaagttctgacaaattctctcgtacacctaaag 260  Q
    |||| ||||||||||| |||| | ||| |||||| |||| |||||| ||||| ||| || ||| |||||||||||| ||| || |||||| ||| || |     
T  29006603 caatggaatccttgacatgacatacacattcacaccaagcgtatcgtcaatgttagttttacagaataaagttctgtcaacttatctcgtgcac-tagaa 29006505  T
Q  261 aagagaacgaataatttagtataattatcggcagaatttagactcaaaacaatgt 315  Q
    || |||| |||| ||||||||||||| |  |||||||||||||||| || |||||    
T  29006504 aaaagaatgaatgatttagtataatttttagcagaatttagactcacaagaatgt 29006450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 15205256 - 15205202
Alignment:
Q  367 gtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattca 421  Q
    ||||| |||||||||| |||  |||||||||||||||||||||||||||| ||||    
T  15205256 gtgaatagaaataaccatttgtaagagtttgttcatgaatgattacattgcttca 15205202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 29006743 - 29006661
Alignment:
Q  56 atgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccc 138  Q
    ||||| |||||||| || |||||  ||||||||||||| ||  ||||||||| | ||||||||| |||| |||||||||||||    
T  29006743 atgatcaagatgaatatgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgccc 29006661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 315
Target Start/End: Original strand, 9851458 - 9851594
Alignment:
Q  178 gtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaataattt 277  Q
    |||| |||||| |||||| |||| ||||||||||||||   ||||| ||||||||| || || ||||||| || || ||| |||| |||| || | ||||    
T  9851458 gtgatttgcacattcacaccaagcgtatcgacaatggtgttttacagaataaagttttgtcacattctcttgtgca-ctagagaaaagaaagactgattt 9851556  T
Q  278 agtataattatcggcagaatttagactcaaaacaatgt 315  Q
    ||||| ||| | |||||||||| |||||| || |||||    
T  9851557 agtattatttttggcagaattttgactcacaataatgt 9851594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 15205566 - 15205483
Alignment:
Q  81 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 164  Q
    |||| |||||||| ||  ||||||||||| ||||||||| || | |||||||||| || ||||||||||||  || ||||||||    
T  15205566 gtgcccataaatttcaaagcgtgtgtgggacacactaactttgaggttcgattcgtccccaccagttatgccgactggatgcaa 15205483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 9080655 - 9080724
Alignment:
Q  167 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttct 235  Q
    |||| |||||||| |||||||| ||||||| ||  |||| || ||||||||| |||||||||||||||||    
T  9080655 gaattcttgacgtaacttgcacattcacattaaacgtatagatcaatggtagtttacaaaataaagttct 9080724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 28270773 - 28270806
Alignment:
Q  327 tccaaagtgtctctatttatagagaaacttatgt 360  Q
    |||||||| |||||||||||||||||||||||||    
T  28270773 tccaaagtatctctatttatagagaaacttatgt 28270806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 506
Target Start/End: Original strand, 28274093 - 28274197
Alignment:
Q  404 aatgattacattgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaa--tatattttgaaaatttctc 501  Q
    |||| |||||||| |||| | |||||||| |||| | |||| ||||||||||  | || |||||||||||||||  |||  ||||||||| || ||||||    
T  28274093 aatggttacattgtttcaatagtcaagcaatacatcgtttcactaaaaggttcatattcaaccattgcaactttccaaatttatattttggaagtttctc 28274192  T
Q  502 tcaca 506  Q
    |||||    
T  28274193 tcaca 28274197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 338 - 512
Target Start/End: Complemental strand, 12729309 - 12729135
Alignment:
Q  338 tctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattaca 437  Q
    |||||||| ||||||| ||||||| | ||||||||||||| ||| ||||| ||||||||| ||||||||| ||| |||| |||| ||||| |||||||||    
T  12729309 tctatttacagagaaatttatgtcctgtggtgaagagaaacaactctttagaagagtttgctcatgaatggttatattgcttcaattgtcgagcattaca 12729210  T
Q  438 ccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaattaat 512  Q
    ||||||||||||||||| ||| ||||||||||||||||||  |||||||||||| ||||||||||||||| ||||    
T  12729209 ccttttctctaaaaggtctctatttaaccattgcaactttccaaatatattttggaaatttctctcacaaataat 12729135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 317 - 506
Target Start/End: Original strand, 28696261 - 28696450
Alignment:
Q  317 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 416  Q
    ||||||||  |||||||||||||||||||| |||||||||||||  ||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||    
T  28696261 attttctgcatccaaagtgtctctatttatggagaaacttatgttctttggtgaagagaaacatccctttagaagagtttgttcatgaatggttacattg 28696360  T
Q  417 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 506  Q
     |||| |||| ||||||||||| ||||||||||||| | ||| |||| ||||||||||||||   | ||||||| |||||| ||||||||    
T  28696361 cttcaattgttaagcattacacattttctctaaaagatctctatttacccattgcaactttttcgaaatattttaaaaattactctcaca 28696450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 168 - 327
Target Start/End: Complemental strand, 12729502 - 12729344
Alignment:
Q  168 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaa 267  Q
    |||||||||| |||||||||| |||||| ||||  |||||||||| |||| ||||  |||||||||||| ||| ||||||||| || ||| |||| ||||    
T  12729502 aatccttgacatgacttgcacattcacaccaagcatatcgacaattgtagtttactgaataaagttctgtcaatttctctcgtgca-ctagagaaaagaa 12729404  T
Q  268 cgaataatttagtataattatcggcagaatttagactcaaaacaatgtaattttctgtct 327  Q
     |||| ||||||||||||| |||||||||||| ||| || |||||||| |||||||||||    
T  12729403 agaattatttagtataattttcggcagaattttgacacacaacaatgtgattttctgtct 12729344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 28695947 - 28696085
Alignment:
Q  26 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaa 125  Q
    ||||| || ||||||||||| | |||||| |||||||| |||||||| |||||   ||| |||||||||||  ||||||||||| ||||||||| ||||     
T  28695947 ggggtttgttgcaataacttgaccaagaagatgatgaatatgaacatgatgaagaatgcgcataaattccaaagcgtgtgtgggacacactaacttttag 28696046  T
Q  126 gttcgattcgccctcaccagttatgcaaaccggatgcaa 164  Q
    ||| |||||||||||||||||||||  |||| |||||||    
T  28696047 gtttgattcgccctcaccagttatgtcaaccagatgcaa 28696085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 12729644 - 12729541
Alignment:
Q  61 gaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggat 160  Q
    |||||||||||| |||||  || ||||| |||||||  | ||||||||| ||||||||| |||| || |||||||||  |||||||||||| ||||||||    
T  12729644 gaagatgaacatgatgaaaagtacacatgaattccaaagagtgtgtgggacacactaacctttaggtacgattcgcctccaccagttatgccaaccggat 12729545  T
Q  161 gcaa 164  Q
    ||||    
T  12729544 gcaa 12729541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 25953674 - 25953607
Alignment:
Q  26 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 93  Q
    |||||||| ||||||||||| | |||||| || ||||||||||| || ||||| ||||||||||||||    
T  25953674 ggggtctgatgcaataacttaaccaagaagataatgaagatgaatatgatgaagtgtgcacataaatt 25953607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 44729364 - 44729228
Alignment:
Q  32 tgctgcaataacttcatcaagaatatgatgaagatgaacataa----tgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagt 127  Q
    |||| ||||||||| |||||||| || ||||| |||||||| |    ||||  ||||||||||||||||  |||||||||||  |||||||| |||| ||    
T  44729364 tgctacaataacttgatcaagaagataatgaaaatgaacatgaatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgt 44729265  T
Q  128 tcgattcgccctcaccagttatgcaaaccggatgcaa 164  Q
    || |||| |||   | |||||||| ||||||||||||    
T  44729264 tcaattcacccctgcgagttatgccaaccggatgcaa 44729228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 318 - 507
Target Start/End: Complemental strand, 52653712 - 52653523
Alignment:
Q  318 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 417  Q
    ||||||| ||||||||||||| | | ||||||||||||| |||| ||||||||||||| | |||| |||||||||||||||||||||||| ||||||||     
T  52653712 ttttctgcctccaaagtgtctttgtctatagagaaacttgtgtcctttggtgaagagacacaaccatttaaaagagtttgttcatgaatggttacattgc 52653613  T
Q  418 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 507  Q
     ||| ||||||| || ||||||||||| ||||||||| | | ||||| ||||||||||||  |||||||||||| |||||||||||||||    
T  52653612 atcaattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgcaactttccaaatatattttggaaatttctctcacaa 52653523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 52654075 - 52653924
Alignment:
Q  14 agaacctgtgtt-ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 112  Q
    |||||||||||| ||||| ||| |||||||||| |||||||| |||||||| |||||||| ||||| |||||||||||||||||  ||||||||||| ||    
T  52654075 agaacctgtgtttggggtttgcggcaataacttgatcaagaagatgatgaaaatgaacatgatgaagtgtgcacataaattccaaagcgtgtgtgggaca 52653976  T
Q  113 cactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 164  Q
    ||||||| |||| |||| ||||||||||||||||||||| ||||||||||||    
T  52653975 cactaacctttaggttcaattcgccctcaccagttatgccaaccggatgcaa 52653924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 157 - 326
Target Start/End: Complemental strand, 52653896 - 52653728
Alignment:
Q  157 ggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacct 256  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||| ||  ||||| || ||    
T  52653896 ggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcgacaatggtagtttacagaataaagttctgtcaattttcctcgtgca-ct 52653798  T
Q  257 aaagaagagaacgaataatttagtataattatcggcagaatttagactcaaaacaatgtaattttctgtc 326  Q
    | |||| || | |||| ||||||||||||| || |||||||||| ||||| |||||||||||||||||||    
T  52653797 agagaaaagtaagaatgatttagtataattttcagcagaatttaaactcacaacaatgtaattttctgtc 52653728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 164 - 306
Target Start/End: Complemental strand, 33709945 - 33709804
Alignment:
Q  164 atagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaag 263  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| |||||||||| || || ||| ||||     
T  33709945 atagaatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttacagaataaagttctgtcaaattctctggtgca-ctagagaaa 33709847  T
Q  264 agaacgaataatttagtataattatcggcagaatttagactca 306  Q
    |||| |||| ||||||||||||| |||||| ||||||||||||    
T  33709846 agaaagaatgatttagtataattttcggcaaaatttagactca 33709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 367 - 507
Target Start/End: Original strand, 50914636 - 50914776
Alignment:
Q  367 gtgaagagaaataaccctttaaaagagtttgtt-catgaatgattacattgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaac 465  Q
    ||||||||||| |||| |||  ||||||||||| |||||||| || ||||| |||| |||||||||||||||||||| ||||||||||| ||| ||||||    
T  50914636 gtgaagagaaaaaacc-tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaac 50914734  T
Q  466 cattgcaacttttgaaatatattttgaaaatttctctcacaa 507  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  50914735 cattgcaacttttcaaatatattttgaaaatttctctaacaa 50914776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 318 - 504
Target Start/End: Complemental strand, 33709752 - 33709572
Alignment:
Q  318 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 417  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||| |||||          ||||||||     
T  33709752 ttttctgcctccaaagtgtctctatttatagagaaacttatgtcctttggtgaagggaaagaaccctttgaaagattttgt----------ttacattgc 33709663  T
Q  418 ttcagttgtcaagcattacacc--ttttctctaaaaggtttctttttaaccattgcaacttttgaaata---tattttgaaaatttctctca 504  Q
    |||| |||| ||||||||||||  |||| | |||||||| || |||||||||||||||||||  |||||   ||||||| ||||||||||||    
T  33709662 ttcaattgtaaagcattacaccttttttttataaaaggtctc-ttttaaccattgcaactttccaaatatattattttggaaatttctctca 33709572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 33710129 - 33709981
Alignment:
Q  14 agaacctgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccac 113  Q
    |||||||||||||||||||||||||||| ||| | |||||| ||||| | || |||||| ||||| ||||||| |||||||||  ||||||||||| |||    
T  33710129 agaacctgtgttggggtctgctgcaatatcttgaccaagaaaatgat-atgaagaacatgatgaagtgtgcac-taaattccaaagcgtgtgtgggacac 33710032  T
Q  114 actaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 164  Q
    |||||| |||| | ||||||| ||  |||||||||||  ||||||||||||    
T  33710031 actaacctttaggatcgattcacctccaccagttatgtcaaccggatgcaa 33709981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 167 - 327
Target Start/End: Original strand, 40574317 - 40574477
Alignment:
Q  167 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagag 265  Q
    ||||| |||||||||||||||| ||||||  ||| ||||| | ||||| ||| ||||| |||||||||||| ||| ||||||||| ||| || |||| ||    
T  40574317 gaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcac-tagagaaaag 40574415  T
Q  266 aacgaataatttagtataattatcggcagaatttagactcaaaacaatgtaattttctgtct 327  Q
    || |||| ||||| ||| ||| |||||||||||| |||||| || ||||| ||||| |||||    
T  40574416 aaagaatgatttaatattattttcggcagaattttgactcacaagaatgtgattttgtgtct 40574477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 16729721 - 16729628
Alignment:
Q  343 ttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacac 438  Q
    ||||||||||| | ||||| ||||||||||||||| ||| ||| |||||||||| ||||||||| ||||||||| |||| | |||||| |||||||    
T  16729721 ttatagagaaagt-atgtcttttggtgaagagaaacaactctt-aaaagagtttcttcatgaattattacattgcttcaatagtcaagtattacac 16729628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 16729980 - 16729894
Alignment:
Q  21 gtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtg 107  Q
    |||| |||||||||||||||||||| ||||| || | ||||||||||||||| || || ||||||||| |||| ||  |||||||||    
T  16729980 gtgtcggggtctgctgcaataacttgatcaataagaagatgaagatgaacatgataaagtgtgcacattaatttcaaagcgtgtgtg 16729894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 23686071 - 23686022
Alignment:
Q  460 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 509  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  23686071 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 23686022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 509
Target Start/End: Complemental strand, 24058308 - 24058259
Alignment:
Q  460 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 509  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  24058308 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 24058259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 506
Target Start/End: Original strand, 2257449 - 2257521
Alignment:
Q  434 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 506  Q
    |||| |||||||||||| ||| ||| ||||| ||||||||||||| |||||||||||  |||||||| |||||    
T  2257449 tacatcttttctctaaatggtctctatttaagcattgcaacttttcaaatatatttttgaaatttctatcaca 2257521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 29827115 - 29827187
Alignment:
Q  24 ttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    |||||||||||||||||||||  | |||||| |||||||||||||  || ||||| | || ||||||||||||    
T  29827115 ttggggtctgctgcaataactcgaccaagaaaatgatgaagatgactatgatgaagtttgaacataaattcca 29827187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 334 - 509
Target Start/End: Original strand, 34681294 - 34681469
Alignment:
Q  334 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 433  Q
    |||| ||||||||||||||| ||||||| ||||| ||||| ||| ||| ||||  |||||||||||||| |||| | |||||| |||| ||||||| |||    
T  34681294 tgtccctatttatagagaaatttatgtcttttggggaagaaaaacaactcttttgaagagtttgttcatcaatggtaacattgcttcaattgtcaaacat 34681393  T
Q  434 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 509  Q
    ||||| ||||||||||||||||| | ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  34681394 tacactttttctctaaaaggtttatgtttaaccattgcaacattccaaatatattttgaaaatttctctcacaatt 34681469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 328 - 487
Target Start/End: Original strand, 14219075 - 14219233
Alignment:
Q  328 ccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtc 427  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||| ||||||||  |||||||||| |||| ||||     
T  14219075 ccaaagtgtctctatttatagagaaacttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaccgattacattgcttcaattgta 14219174  T
Q  428 aagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatat 487  Q
    ||||||| ||| |||||||| |||| ||||| |||||| |||||||| ||| ||||||||    
T  14219175 aagcattgcacattttctct-aaagatttctatttaactattgcaacatttcaaatatat 14219233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 42779878 - 42779936
Alignment:
Q  20 tgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaa 78  Q
    |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  42779878 tgtgttggggtctgctgcaataacttgaccaagaagatgatgaagatgaacataatgaa 42779936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 393
Target Start/End: Complemental strand, 14891647 - 14891583
Alignment:
Q  329 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagag 393  Q
    ||||||||||||| ||||||| |||| |||||||||||||| ||||| | ||| |||| ||||||    
T  14891647 caaagtgtctctacttatagaaaaacatatgtcatttggtgcagagatacaactctttgaaagag 14891583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 716045 - 716118
Alignment:
Q  20 tgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattc 94  Q
    ||||||| |||||||||||||||||| | |||||| |||||||| ||||| || |||||  || |||||||||||    
T  716045 tgtgttgaggtctgctgcaataacttgaccaagaagatgatgaa-atgaatatgatgaagcgtacacataaattc 716118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 16272130 - 16272183
Alignment:
Q  25 tggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaa 78  Q
    ||||||||||||||||||||| |  ||||| ||||| ||||||||||| |||||    
T  16272130 tggggtctgctgcaataacttgactaagaagatgataaagatgaacatgatgaa 16272183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 34681118 - 34681195
Alignment:
Q  179 tgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacc 255  Q
    |||||||||| ||||||||||| ||||||| ||||| ||| ||||  ||||||||| || ||| ||||||||| ||||    
T  34681118 tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgtaataaagttttgtcaatttctctcgttcacc 34681195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 317 - 507
Target Start/End: Original strand, 24129520 - 24129710
Alignment:
Q  317 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 416  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||  |||||||| |||  ||||||||||||||||||| ||||||||    
T  24129520 attttttgcctccagagtgtctctatttatagagaaacttatgtcatttggttaaggaaaataaccatttggaagagtttgttcatgaatggttacattg 24129619  T
Q  417 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 507  Q
     |||| || ||||||| ||||||||| ||| |||| |  | | |||||||||||| |||||  ||||||||||||| ||||||||||||||    
T  24129620 cttcaattatcaagcaatacacctttcctccaaaaagcctatatttaaccattgcgactttctaaatatattttgataatttctctcacaa 24129710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 317 - 501
Target Start/End: Original strand, 48780039 - 48780222
Alignment:
Q  317 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 416  Q
    |||||||| ||||||||| ||| |||||||||| ||||| | ||| ||||||| ||||||| |||| || |||||| ||| |||||||||  ||| ||||    
T  48780039 attttctgcctccaaagtatctttatttatagataaactcaagtcttttggtgtagagaaacaacctttgaaaagaatttattcatgaatagttatattg 48780138  T
Q  417 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctc 501  Q
     |||| ||||||| ||||| |||||||||||||||| | | | ||||| ||||||||||||  ||||||||||||||||||||||    
T  48780139 cttcaattgtcaaacattataccttttctctaaaagatct-tgtttaatcattgcaactttccaaatatattttgaaaatttctc 48780222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 334 - 473
Target Start/End: Original strand, 1516526 - 1516664
Alignment:
Q  334 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 433  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||||| ||||| |||||||||||||| ||| ||||  ||| || | |||||     
T  1516526 tgtctctatttctagagaaacttatgtcatttggtgaacggaaataaccctttgaaagattttgttcatgaatggttatattgcgtcatttctaaagcac 1516625  T
Q  434 tacaccttttctctaaaaggtttctttttaaccattgcaa 473  Q
    |||||||||||||||||| || || |||||||||||||||    
T  1516626 tacaccttttctctaaaatgtctc-ttttaaccattgcaa 1516664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 340 - 506
Target Start/End: Complemental strand, 20251312 - 20251147
Alignment:
Q  340 tatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacacc 439  Q
    |||||||||||||||||||||| |||||| |||| ||| |||  ||||| |||||| ||||||||||  |||||||| |||| || |||| || |||||     
T  20251312 tatttatagagaaacttatgtcctttggtaaagaaaaacaactatttaagagagtt-gttcatgaatagttacattgtttcaattatcaaacaatacact 20251214  T
Q  440 ttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 506  Q
    ||||||||||||| | ||| |||||| |||||||||||  ||||||||||| |||||||||||||||    
T  20251213 ttttctctaaaagatctctatttaacaattgcaactttccaaatatattttaaaaatttctctcaca 20251147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 326 - 477
Target Start/End: Original strand, 1494959 - 1495110
Alignment:
Q  326 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaag-agtttgttcatgaatgattacattgattcagtt 424  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||  |||| || ||||| |||| | |||||||||||||| ||| |||| ||||  |    
T  1494959 ctccaaaatgtctctttttatagagaaacttatgtcatttggtgaacggaaacaaacctttgaaagaattttgttcatgaatggttatattgcttcaact 1495058  T
Q  425 gtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttt 477  Q
    || |||| |||||||||||||||||| ||| || |||||||||||||||||||    
T  1495059 gtaaagctttacaccttttctctaaatggtctc-ttttaaccattgcaacttt 1495110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 413 - 506
Target Start/End: Complemental strand, 122922 - 122829
Alignment:
Q  413 attgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 506  Q
    |||| |||| |||||||||| ||||| |||||||||||| |||||| |||||| |||||||||||| ||||||| |||| ||||||||||||||    
T  122922 attgtttcaattgtcaagcaatacacattttctctaaaatgtttctatttaactattgcaacttttcaaatatactttggaaatttctctcaca 122829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 3415667 - 3415597
Alignment:
Q  26 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    |||||||||||||||||||| | |||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  3415667 ggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcacataaattcca 3415597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 3425227 - 3425145
Alignment:
Q  15 gaacctgtgttgggg-tctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    ||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||| || || |||||||||||||||||    
T  3425227 gaacctgtgttggggatctgctgcaataacttgaccaagaagatgatgaagatgaacatgataaagtgtgcacataaattcca 3425145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 342 - 416
Target Start/End: Original strand, 1533060 - 1533134
Alignment:
Q  342 tttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 416  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||| ||||| ||||||||| |||| ||| ||||    
T  1533060 tttatagagaaacttatgtcatttgatgaagggaaacaaccctttgaaagattttgttcataaatggttatattg 1533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 18736848 - 18736918
Alignment:
Q  26 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    ||||||||||| ||||||||  ||||||| ||||| ||||||||| | ||||| |||||||||||||||||    
T  18736848 ggggtctgctgtaataacttggtcaagaagatgattaagatgaacttgatgaagtgtgcacataaattcca 18736918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 18670524 - 18670597
Alignment:
Q  21 gtgttggg-gtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 93  Q
    |||||||| ||||| ||||||||||| | |||||| ||||| ||||||||||| ||||| ||||||||||||||    
T  18670524 gtgttgggcgtctgttgcaataacttgaccaagaagatgataaagatgaacatgatgaagtgtgcacataaatt 18670597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 48779718 - 48779799
Alignment:
Q  56 atgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgcc 137  Q
    ||||| ||||||||||| ||||| |||||| ||||||| ||  |||||||||||  |||||||| |||| ||||||||||||    
T  48779718 atgataaagatgaacatgatgaagtgtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcc 48779799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 20251523 - 20251439
Alignment:
Q  167 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgt 250  Q
    ||||| |||| ||| |||| || ||||||||||||||||||| ||||| ||| ||||| |||||||||||| ||| |||||||||    
T  20251523 gaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgt 20251439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 30020367 - 30020297
Alignment:
Q  24 ttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattc 94  Q
    ||||| |||||||||||||||| | |||||| |||||||||||||  || ||||| |||||| ||||||||    
T  30020367 ttgggatctgctgcaataacttgaccaagaagatgatgaagatgactatgatgaagtgtgcatataaattc 30020297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 404
Target Start/End: Complemental strand, 46324444 - 46324378
Alignment:
Q  338 tctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatga 404  Q
    ||||| |||||| ||||||||||| | | ||||||||||| ||| ||||| ||||||||||||||||    
T  46324444 tctatatatagaaaaacttatgtcctcttgtgaagagaaacaactctttagaagagtttgttcatga 46324378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 20251710 - 20251618
Alignment:
Q  14 agaacctgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgt 106  Q
    |||| |||||||||||||||||| ||||  || |  ||||| ||||||||||||||||| |||||  || |||||||||| ||  ||||||||    
T  20251710 agaatctgtgttggggtctgctgtaatagtttgactaagaagatgatgaagatgaacatgatgaagagtacacataaatttcaaagcgtgtgt 20251618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 477
Target Start/End: Original strand, 1533134 - 1533180
Alignment:
Q  430 gcattacaccttttctctaaaaggtttctttttaaccattgcaacttt 477  Q
    |||||||||||||||||||| |||| || |||||||||||||||||||    
T  1533134 gcattacaccttttctctaataggtctc-ttttaaccattgcaacttt 1533180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 24391951 - 24391830
Alignment:
Q  162 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaaga 261  Q
    |||| |||||||||  ||||||||||| | |||| |||  |||||||||||| ||| ||||| ||||||||| || ||| ||||||| | || ||| |||    
T  24391951 caatggaatccttggtgtgacttgcacat-cacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttctctcatgca-ctagaga 24391854  T
Q  262 agagaacgaataatttagtataat 285  Q
    | |||| |||| ||||||||||||    
T  24391853 aaagaaagaatgatttagtataat 24391830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 32429778 - 32429731
Alignment:
Q  47 atcaagaatatgatgaagatgaacataatgaattgtgcacataaattc 94  Q
    |||||||  ||||||||||||||||| ||||| |||||||||||||||    
T  32429778 atcaagatgatgatgaagatgaacatgatgaagtgtgcacataaattc 32429731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 18716175 - 18716245
Alignment:
Q  26 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    ||||||||||| ||||||||   |||||| ||||| ||||||||| | ||||| |||| ||||||||||||    
T  18716175 ggggtctgctgtaataacttggccaagaagatgattaagatgaacttgatgaagtgtgtacataaattcca 18716245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 24129144 - 24129292
Alignment:
Q  14 agaacctgtgttgg-ggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 112  Q
    ||||| |||||||| |||| |||  ||||| || ||||||||   ||||| |||||| || |||||  ||||||||||||||||  || |||| ||| ||    
T  24129144 agaacatgtgttggaggtcagctataataatttgatcaagaaggcgatgatgatgaatatgatgaaaagtgcacataaattccaaagcatgtgcgggaca 24129243  T
Q  113 cactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatg 161  Q
    || |||  ||||| || ||||| ||| |||||||||||| |||| ||||    
T  24129244 cattaatctttaactttgattctcccccaccagttatgccaaccagatg 24129292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 47071118 - 47071166
Alignment:
Q  24 ttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacat 72  Q
    |||||||||||| ||||||||| |  ||||| |||||||||||||||||    
T  47071118 ttggggtctgctacaataacttgactaagaagatgatgaagatgaacat 47071166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 326 - 501
Target Start/End: Original strand, 12239809 - 12239983
Alignment:
Q  326 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttg 425  Q
    ||||||||||||| ||||||||||||||||||| || |||| | |||||    |||| ||| |||||||||||||||||||| ||||||||  ||| |||    
T  12239809 ctccaaagtgtctttatttatagagaaacttatatcctttgatcaagagccgcaaccatttgaaagagtttgttcatgaatggttacattgcatcaattg 12239908  T
Q  426 tcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctc 501  Q
    ||||||| ||||| ||||| ||||||||| | | ||||||||||||||| ||| |||||||||||| |||||||||    
T  12239909 tcaagcaatacactttttcactaaaaggtctttctttaaccattgcaac-tttcaaatatattttggaaatttctc 12239983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 12239438 - 12239590
Alignment:
Q  14 agaacctgtgttgg-ggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 112  Q
    ||||| |||||||| ||| |||||||||||||| || ||||| ||||||| |||||| || ||||| |||||||||||||| ||  ||||||||||| ||    
T  12239438 agaacttgtgttggaggtttgctgcaataacttgattaagaagatgatgatgatgaatatgatgaagtgtgcacataaatttcaaagcgtgtgtgggaca 12239537  T
Q  113 cactaacgtttaagttcgattcgccctcaccagttatg-caaaccggatgcaa 164  Q
    || |||| |||| ||||||||||||| ||||||||||| ||||||||||||||    
T  12239538 cattaacctttaggttcgattcgcccccaccagttatgtcaaaccggatgcaa 12239590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 319 - 513
Target Start/End: Complemental strand, 1840589 - 1840394
Alignment:
Q  319 tttctgtctccaaagtgtctctatttatagagaaacttatgt-catttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 417  Q
    |||||| ||||||| ||||||||||||||||||||||||||| | |||| |||||| | | |||  |||| |||| |||||||||||||| ||||| |      
T  1840589 tttctgcctccaaaatgtctctatttatagagaaacttatgtccttttgatgaagaaagacaactttttagaagaatttgttcatgaatggttacaatac 1840490  T
Q  418 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaa--tatattttgaaaatttctctcacaattaata 513  Q
    || | || ||||| |||||||| |||  ||||||||| || | |||||||||||||||||| |||  |||||||| |||||| |||||||||||||||    
T  1840489 ttgaattatcaagaattacaccattt-actaaaaggtctc-tcttaaccattgcaacttttcaaatttatattttaaaaattactctcacaattaata 1840394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 37469178 - 37469058
Alignment:
Q  14 agaacctgtgttgggg-tctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 112  Q
    |||||||||||||||| | ||| |||||||||| |||||||| ||||||||||||||||| || || |||||||||||||| ||  | ||||||||| ||    
T  37469178 agaacctgtgttgggggtttgcagcaataacttgatcaagaagatgatgaagatgaacatgattaaatgtgcacataaatttcaaagtgtgtgtgggaca 37469079  T
Q  113 cactaacgtttaagttcgatt 133  Q
    ||||||| |||| ||| ||||    
T  37469078 cactaacctttaggtttgatt 37469058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 24870718 - 24870567
Alignment:
Q  14 agaacctgtgttgggg-tctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 112  Q
    ||||||| |||||||| | |||||||||||||| || ||||| |||||||||||  |||| ||||||  | |||||||||||||   | ||| |||| ||    
T  24870718 agaacctatgttgggggtttgctgcaataacttgatgaagaagatgatgaagatagacatgatgaataatacacataaattccacatcttgtatgggaca 24870619  T
Q  113 cactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 164  Q
      ||||| ||||||||||||||||||  ||||||||||| ||||||||||||    
T  24870618 tgctaacctttaagttcgattcgcccctaccagttatgccaaccggatgcaa 24870567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 326 - 488
Target Start/End: Complemental strand, 24870367 - 24870206
Alignment:
Q  326 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttg 425  Q
    |||||||||||||||||||||||||||| ||||||| |   |||||||||||||||  |||| ||||||||||| || || | ||| | || |||| |      
T  24870367 ctccaaagtgtctctatttatagagaaaattatgtcttacagtgaagagaaataactatttagaagagtttgttaataaacggttagactgcttcattga 24870268  T
Q  426 tcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatatt 488  Q
    ||| |||||||||| |||| ||||||||| |  ||||||| |||||||||||| |||| ||||    
T  24870267 tcacgcattacaccctttcactaaaaggtct-attttaactattgcaacttttcaaatttatt 24870206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 168 - 323
Target Start/End: Original strand, 12239628 - 12239782
Alignment:
Q  168 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaa 267  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||| || || ||||||||| || ||| || ||| ||| | ||| |||  ||||    
T  12239628 aatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttccagaataaagttttgtcaatttatctagtata-ctagagataagaa 12239726  T
Q  268 cgaataatttagtataattatcggcagaatttagactcaaaacaatgtaattttct 323  Q
     |||||||||| ||| ||| |||||||||||   || || |||||||| |||||||    
T  12239727 agaataatttaatattattttcggcagaattctaacacacaacaatgtgattttct 12239782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 5437036 - 5436975
Alignment:
Q  35 tgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    ||||||||||| | |||||| ||||||||||||||||| ||||| |||||| ||||||||||    
T  5437036 tgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcca 5436975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 1829807 - 1829883
Alignment:
Q  326 ctccaaagtgtctctatttatagagaaacttatgtcattt-ggtgaagagaaataaccctttaaaagagtttgttca 401  Q
    ||||||| ||||||||||||||||||||||| |||| ||| | | |||| ||| ||| ||||||||||||| |||||    
T  1829807 ctccaaaatgtctctatttatagagaaacttgtgtcctttcgataaagataaacaactctttaaaagagttcgttca 1829883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 451
Target Start/End: Complemental strand, 24533284 - 24533212
Alignment:
Q  379 aaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacaccttttctctaaaa 451  Q
    |||||||| |||| ||||||||||||||| |||||||| | || |||| || |||||||  ||||||||||||    
T  24533284 aaccctttgaaagtgtttgttcatgaatggttacattgctacaattgttaaacattacatattttctctaaaa 24533212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 478
Target Start/End: Original strand, 34091651 - 34091806
Alignment:
Q  318 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 417  Q
    |||||||||||  |||||||| |||||||| ||||| |||||   |||| |||| ||||| ||| ||||||     ||| |||||||||||||||| |      
T  34091651 ttttctgtctctcaagtgtctttatttataaagaaatttatgatctttgatgaacagaaacaactctttaat----ttttttcatgaatgattacactac 34091746  T
Q  418 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaactttt 478  Q
    |||| || |||| |||||||| |||| | |||||||| | | ||||||||||| |||||||    
T  34091747 ttcaattatcaaacattacacatttt-tttaaaaggtctttatttaaccattgtaactttt 34091806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 23756987 - 23757068
Alignment:
Q  14 agaacctgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcc 95  Q
    ||||||| ||||||||| ||  |||| ||||| |  ||||| ||||||||||||||||| |||||  ||| |||||||||||    
T  23756987 agaacctttgttggggtttggagcaagaacttgactaagaaaatgatgaagatgaacatgatgaagagtgaacataaattcc 23757068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 9e-35; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 318 - 504
Target Start/End: Original strand, 28612324 - 28612508
Alignment:
Q  318 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 417  Q
    ||||||| ||| ||||||||| | |||||| ||||||||||||||||||||||||| ||| || | |||  ||||||||||||||||||  ||| ||||     
T  28612324 ttttctgcctcgaaagtgtctatctttataaagaaacttatgtcatttggtgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgc 28612423  T
Q  418 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 504  Q
    |||| ||||||| || ||||||||| ||||||||||  ||| |||||||||| |||  ||| |||||||||||| ||||||||||||    
T  28612424 ttcaattgtcaaacaatacacctttgctctaaaaggcctctatttaaccattacaa--ttttaaatatattttggaaatttctctca 28612508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 28611983 - 28612044
Alignment:
Q  32 tgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 93  Q
    |||||||||||||| |||||||| |||||||| |||||||| ||||| ||||||||||||||    
T  28611983 tgctgcaataacttgatcaagaagatgatgaatatgaacatgatgaagtgtgcacataaatt 28612044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 28612144 - 28612303
Alignment:
Q  162 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaag 260  Q
    |||| ||||||||||||||||||| || |||||| ||||  |||||  |||||||||  ||||||| || |||||| ||| | | ||||| ||| || ||    
T  28612144 caatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagtatacaaaacaatgttctgtcaattcccctcgtgcac-tagag 28612242  T
Q  261 aagagaacgaataatttagtataattatcggcagaatttagactcaaaacaatgtaatttt 321  Q
    |  |||| |||| ||||||||||||| |||||||||||| |||||| || ||||| |||||    
T  28612243 ataagaaagaatgatttagtataattttcggcagaatttcgactcacaagaatgtgatttt 28612303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 11932066 - 11931984
Alignment:
Q  168 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgt 250  Q
    ||||||||| |||||||||   |||||| ||||| ||||||||||||||| ||| | |||||| ||||| |||||||||||||    
T  11932066 aatccttgatgtgacttgcttattcacaccaagtttatcgacaatggtagtttatagaataaaattctgtcaaattctctcgt 11931984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 11932187 - 11932104
Alignment:
Q  81 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 164  Q
    ||||||||||||| ||  || ||||| || ||||||||| |||| ||| ||||||||| ||| |||||||| ||||||||||||    
T  11932187 gtgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgcccccactagttatgccaaccggatgcaa 11932104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 24075623 - 24075706
Alignment:
Q  14 agaacctgtgtt-ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    |||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||| || |  || |||||| ||||||||||    
T  24075623 agaacctgtgttaggggtctgctgcaataacttgattaagaagatgataaagatgaatatgacaaagtgtgcatataaattcca 24075706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 21937271 - 21937326
Alignment:
Q  38 aataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 93  Q
    |||||||| | |||||| |||||||||||||| || ||||| ||||||||||||||    
T  21937271 aataacttgaccaagaagatgatgaagatgaatatgatgaagtgtgcacataaatt 21937326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 168 - 328
Target Start/End: Complemental strand, 49053905 - 49053745
Alignment:
Q  168 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaa 267  Q
    ||||||||||||||||||||| |||||| ||||  ||||||||||||||| |||||||||||||||||| ||| ||| ||||| || ||| |||||||||    
T  49053905 aatccttgacgtgacttgcacattcacaccaagcatatcgacaatggtagtttacaaaataaagttctgccaatttccctcgtgca-ctagagaagagaa 49053807  T
Q  268 cgaataatttagtataa-ttatcggcagaatttagactcaaaacaatgtaattttctgtctc 328  Q
     |||| ||||||||||| || | |||||||||  ||| || |||||||| ||||| ||||||    
T  49053806 agaatgatttagtataattttttggcagaattatgacacacaacaatgtgattttatgtctc 49053745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 49061674 - 49061524
Alignment:
Q  14 agaacctgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccac 113  Q
    ||||| ||||||||||||||||||||||| || | ||| || |||| |||||||||||| ||||| ||||||||||||||| |  |||||||||||  ||    
T  49061674 agaacttgtgttggggtctgctgcaataattttaccaaaaagatgaagaagatgaacatgatgaagtgtgcacataaattctaaagcgtgtgtgggaaac 49061575  T
Q  114 actaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 164  Q
    ||||   |||| ||||||||||||| |||||||||||| |||  |||||||    
T  49061574 actagtctttaggttcgattcgcccccaccagttatgccaactagatgcaa 49061524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 49054081 - 49053944
Alignment:
Q  26 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaa 125  Q
    |||||||||||| |||| || | ||| || |||| |||||||||||| ||||| ||| |||||||||||||  |||||||||||  |||||||| ||||     
T  49054081 ggggtctgctgcgataattt-accaaaaagatgaagaagatgaacatgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttag 49053983  T
Q  126 gttcgattcgccctcaccagttatgcaaaccggatgcaa 164  Q
    ||||||||||||| |||||||||| | ||| ||||||||    
T  49053982 gttcgattcgcccccaccagttataccaactggatgcaa 49053944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 162 - 328
Target Start/End: Complemental strand, 49061491 - 49061325
Alignment:
Q  162 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaaga 261  Q
    |||| ||||||||||||||| |||||| |||||| |||   ||||||||||||||| ||||| ||||||||| || ||| ||| ||||| || ||| |||    
T  49061491 caatggaatccttgacgtgatttgcacattcacaccaaacatatcgacaatggtagtttacagaataaagttttgtcaatttccctcgtgca-ctagaga 49061393  T
Q  262 agagaacgaataatttagtataa-ttatcggcagaatttagactcaaaacaatgtaattttctgtctc 328  Q
    | |||| |||| ||||||||||| || |||||||||||  ||| || |||||||| ||||| ||||||    
T  49061392 aaagaaagaatgatttagtataatttttcggcagaattatgacacacaacaatgtgattttatgtctc 49061325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 334 - 507
Target Start/End: Complemental strand, 49053713 - 49053554
Alignment:
Q  334 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 433  Q
    ||||| |||||||| | ||||||||||| ||||||||||||| | || | ||| |||||||||||| ||||||| ||||||||              ||     
T  49053713 tgtctatatttatataaaaacttatgtcctttggtgaagagacacaatcatttgaaagagtttgtttatgaatggttacattg--------------caa 49053628  T
Q  434 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 507  Q
    ||||||||||| ||||||||| | | ||||||||||||||||||  |||||||||||| |||||||||||||||    
T  49053627 tacaccttttcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaa 49053554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 21432180 - 21432110
Alignment:
Q  26 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||  |||| |||||||||||||||||    
T  21432180 ggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgctgaagtgtgcacataaattcca 21432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 44524533 - 44524463
Alignment:
Q  26 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| | |||||||||||||||    
T  44524533 ggggtctgttgcaataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattcca 44524463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 35624693 - 35624776
Alignment:
Q  14 agaacctgtgttgggg-tctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    ||||| |||||||||| |||||||||||||||| | |||||| |||||||||||||| || | ||| |||||||||||||||||    
T  35624693 agaacttgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaatattacgaagtgtgcacataaattcca 35624776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 508
Target Start/End: Complemental strand, 49061293 - 49061133
Alignment:
Q  334 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 433  Q
    |||||||||||||| ||||||||||||| ||| ||||||||| | ||   ||| ||||| |||||| ||||||| ||||||||              ||     
T  49061293 tgtctctatttatatagaaacttatgtcctttcgtgaagagacacaattatttgaaagaatttgtttatgaatggttacattg--------------caa 49061208  T
Q  434 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 508  Q
    ||||||| ||| ||||||||| | | ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  49061207 tacacctattcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaat 49061133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 330 - 445
Target Start/End: Complemental strand, 17458345 - 17458230
Alignment:
Q  330 aaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaa 429  Q
    ||||| |||| ||||||||| ||||||||||| ||||||||||||||| |||   || ||||| ||||||| |||||| ||||||||  | | |||||||    
T  17458345 aaagtatctcaatttatagataaacttatgtcctttggtgaagagaaacaactacttgaaagaatttgttcttgaatggttacattgcatgaattgtcaa 17458246  T
Q  430 gcattacaccttttct 445  Q
     ||||||  |||||||    
T  17458245 acattacttcttttct 17458230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 48366557 - 48366498
Alignment:
Q  35 tgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattc 94  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||| |||||| ||||||||    
T  48366557 tgcaataacttgatcaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattc 48366498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 329 - 491
Target Start/End: Complemental strand, 50059430 - 50059269
Alignment:
Q  329 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtca 428  Q
    |||||||||| |||||||||| || |||||||| ||| ||||| ||||| | |  |||||||||| ||||| | ||||| |||||||| ||   |  |||    
T  50059430 caaagtgtctttatttatagaaaatcttatgtcttttagtgaacagaaaca-ctttttaaaagagcttgtttacgaatggttacattgctttgatgttca 50059332  T
Q  429 agcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttg 491  Q
    |||||||||||| ||| ||| || || ||| |||||| | ||||| |||| ||||||||||||    
T  50059331 agcattacacctcttcactataatgtctctatttaacgactgcaattttttaaatatattttg 50059269  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 29681289 - 29681350
Alignment:
Q  35 tgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    ||||||||||| | |||||| ||||||||||||||||| ||||| |||||| ||||||||||    
T  29681289 tgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcca 29681350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 10917470 - 10917398
Alignment:
Q  318 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaaga 392  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| ||| ||||||||| | ||| |||| |||||    
T  10917470 ttttctgcctccaaagtgtct--atttatagagaaacttatgtcctttagtgaagagatacaactctttgaaaga 10917398  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 52282180 - 52282226
Alignment:
Q  318 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcattt 365  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  52282180 ttttctgtctc-aaagtgtctctatttatagataaatttatgtcattt 52282226  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 43358433 - 43358510
Alignment:
Q  20 tgtgttgggg-tctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    |||||||||| ||| ||||||||| || |||||||| |||||||||||||  || |||||  |||||||| |||||||    
T  43358433 tgtgttggggatctactgcaataaattgatcaagaagatgatgaagatgactatgatgaagcgtgcacatgaattcca 43358510  T

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Target: scaffold0007 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 317 - 508
Target Start/End: Complemental strand, 217689 - 217508
Alignment:
Q  317 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 416  Q
    |||||||| ||| |||||||||  |||||||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||| |||||   ||| | |||    
T  217689 attttctgcctctaaagtgtct--atttatagagaaacttatgtcatttggtaaagataaacaaccttttgaaagagtttgtccatga---attgctttg 217595  T
Q  417 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 508  Q
    |     |||||||| ||||| | ||||||||||||| | ||| |||||||||||||||||||  | ||||||| | ||||||||||||||||    
T  217594 a-----ttgtcaagaattacgcattttctctaaaagatctctatttaaccattgcaacttttttattatatttcggaaatttctctcacaat 217508  T

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Target: scaffold0007; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 329 - 501
Target Start/End: Complemental strand, 215816 - 215646
Alignment:
Q  329 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtca 428  Q
    |||||||||||| | |||||| ||||||||||| |||||||||||||||| |||||||||| |  |||||| ||||||| |||||    |||| | ||||    
T  215816 caaagtgtctctgtctatagaaaaacttatgtcctttggtgaagagaaatgaccctttaaatggatttgtttatgaatggttaca--acttcaatcgtca 215719  T
Q  429 agcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctc 501  Q
    | |||||||  ||||||  ||||| | ||| ||||||||||||||||||  |||||||||||| |||||||||    
T  215718 aacattacatattttcttcaaaagatctctatttaaccattgcaactttctaaatatattttggaaatttctc 215646  T

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Target: scaffold0007; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 168 - 321
Target Start/End: Complemental strand, 217861 - 217708
Alignment:
Q  168 aatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagaga 266  Q
    ||||||||| | ||||||||| |||||| |||||||||||| ||||||||| ||||||||||| |||||| ||| |||||||||  | ||| |||| |||    
T  217861 aatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgt-gaactagagaaaaga 217763  T
Q  267 acgaataatttagtataattatcggcagaatttagactcaaaacaatgtaatttt 321  Q
    | |||| |||||| || ||| |||||||||||  ||| || |||||||| |||||    
T  217762 aagaattatttagaattattttcggcagaattctgacacacaacaatgtgatttt 217708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 218017 - 217956
Alignment:
Q  35 tgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 96  Q
    ||||||||||| |  || || |||||||||||||||||||||||| ||||||||||||||||    
T  218017 tgcaataacttgacaaaaaagatgatgaagatgaacataatgaatagtgcacataaattcca 217956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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