View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_60 (Length: 333)
Name: NF21553_low_60
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 41675905 - 41675610
Alignment:
| Q |
18 |
acagaactatagagagagactctagacaacaggacttaccacatgaaggttgtaggcttgtacgttttccaatgtagatctaaaactacttaaaatggta |
117 |
Q |
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| T |
41675905 |
acagaactatagagagagactctagacaacaggacttaccacatgaaggttgtaggcttgtacgttttccaatgtagatctaaaactacttaaaatggta |
41675806 |
T |
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| Q |
118 |
agttgaagccattgaagagcataagctattaagctctatcaaaaagtagacccttttccttcacaacacacagagagcaaaacagaactatatgtatatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675805 |
agttgaagccattgaagagcataagctattaagctctatcaaaaagtagacccttttccttcacaacacacagagagcaaaacagaactatatgtatatg |
41675706 |
T |
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| Q |
218 |
caacatatataatcaaacatagaatatgataaatattaatctgaagtttacttggatgtgtatataatttttcaccaatgtataaatctaataact |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675705 |
caacatatataatcaaacatagaatatgataaatattaatctgaagtttacttggatgtgtatataatttttcaccaatgtataaatctaataact |
41675610 |
T |
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