View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_low_62 (Length: 332)
Name: NF21553_low_62
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_62 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 30583403 - 30583613
Alignment:
| Q |
19 |
tacactactttatctgggaagaaacaaaaacacagcaccatcaagataaaatataacttgatacatgctgaagaataaaacaacactaatgtgcattatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30583403 |
tacactactttatctgggaagaaacaaaaacacagcaccatcaagataaaatataacttgatatatgctgaagaataaaacaacactaatgtgcattatt |
30583502 |
T |
|
| Q |
119 |
ctttaacaaatttcagaactaccgaaagtgcaaaatacacatttataaaagtaataaactggtcatgctctcaaactaaaaagagagatataggctattc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30583503 |
ctttaacaaatttcagaactaccgaaagtgcaacatacacatttataaaagtaataaactggccatgctctcaaactgaaaagagagatataggctattc |
30583602 |
T |
|
| Q |
219 |
ttttccacaag |
229 |
Q |
| |
|
||||||||||| |
|
|
| T |
30583603 |
ttttccacaag |
30583613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 30583670 - 30583718
Alignment:
| Q |
284 |
cttttaccacaaatatccatgaagtaaaagcacttactctcatttattc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30583670 |
cttttaccacaaatatccatgaagtaaaagcacttactctcatttattc |
30583718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University