View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_63 (Length: 332)
Name: NF21553_low_63
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 27399934 - 27400200
Alignment:
| Q |
1 |
gcacatgaaggccatgttactcttgcctccgaaatccatctgttaagattagatcattccaacaacttgaaaatgcttatgtttgaacattcaacactta |
100 |
Q |
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| T |
27399934 |
gcacatgaaggccatgttactcttgcctccgaaatccatctgttaagattagatcattccaacaacttgaaaatgcttatgtttgaacattcaacactta |
27400033 |
T |
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| Q |
101 |
aatagtaccatatatgtagtgttatgtgaaaatgtaaattatgttgtgaattgccattttt-attttctgttggcattacctgaaaatatgttgaaccaa |
199 |
Q |
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| T |
27400034 |
aatagtaccatatatgtagtgttatgtgaaaatgtaaattatgttgtgaattgccatttttaattttctgttggcattacctgaaaacatgttgaaccaa |
27400133 |
T |
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| Q |
200 |
attgaggttgtttaagacaacctataaaagaagatgttctatatttggataaagttgcttcttgtga |
266 |
Q |
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| T |
27400134 |
attgaggttgtttaagacaacctataaaagaagatgttctatatttggataaagttgcttcttgtga |
27400200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 27400260 - 27400302
Alignment:
| Q |
261 |
ttgtgaacaatacctaagtctagctagagtctcaatacctatg |
303 |
Q |
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| T |
27400260 |
ttgtgaacaatacctaagtctagctagagtatcaatacctatg |
27400302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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