View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_65 (Length: 325)
Name: NF21553_low_65
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 25 - 313
Target Start/End: Complemental strand, 6916307 - 6916021
Alignment:
| Q |
25 |
ttatttgatgggttgtagggtgatgattttgaaggtttactctgtgtgttgtagtagataatgtattgaaacaaggaagtaaaattaagatcaaatacag |
124 |
Q |
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| T |
6916307 |
ttatttgatgggttgtagggtgatgattttgaaggtttactctgtgtgttgtagtagataatgtattgaaacaaggaagtaaaattaagatcaaatacag |
6916208 |
T |
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| Q |
125 |
atggtgtgacatgtgaatgtagaaatgaaacacaaagatatgaactaaaagaatacggttttacttgtcaacaatagtgtgcgtttgttgttgctacttg |
224 |
Q |
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| T |
6916207 |
atggtgtgacatgtgaatgtagaaatgaaacaca--gatatgaactcaaagaatacggttttacttgtcaacaatagtgtgcgtttgttgttgctacttg |
6916110 |
T |
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| Q |
225 |
acatgacactgcacaaagatatcctctgttttacttgtgaatctgattatggagtttaattaatgggctgaaattggtgtttgaagtat |
313 |
Q |
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| T |
6916109 |
acatgacactgcacaaagatatcctctgttttacttgtgaatctgattatggagtttaattaatgggctgaaattggtgtttgaagtat |
6916021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 6916453 - 6916401
Alignment:
| Q |
259 |
ttgtgaatctgattatggagtttaattaatgggctgaaattggtgtttgaagt |
311 |
Q |
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| T |
6916453 |
ttgtgaatgtaattatggagtttgattaatgagctaaaattggtgtttgaagt |
6916401 |
T |
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