View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_68 (Length: 323)
Name: NF21553_low_68
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 32 - 304
Target Start/End: Original strand, 7431051 - 7431323
Alignment:
| Q |
32 |
attgcagcagtatatgtagtttctctacctaaagagtgtactgatgtagaaaacaaattaattccatgtaatcagaattctctgccaacaatgctaatta |
131 |
Q |
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| T |
7431051 |
attgcaggagcatatgtagtttctctgcctaaatagtgtactgatgcagaaaacaaattaattccatgtaatcagaattctctgccagctatgctaatta |
7431150 |
T |
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| Q |
132 |
attatatacaattaacctataaaaacaaattaatgcagtcaaacattgcagcctacgtaatcggaatgcttttacaacaaaatcagaccacatattctca |
231 |
Q |
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| T |
7431151 |
attctatacagttagcctataaaaacaaattaatgcagtcaaaaattgcagcctacgtaatcagaatgcttttacaacaaaatcagaccccatattctca |
7431250 |
T |
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| Q |
232 |
ttacaagtaatagaaaacaaggtggcctaaacattcatgtagcagtttaatcaggtaaccaaggtggccttaa |
304 |
Q |
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| T |
7431251 |
ttacaagtaacagaaaacaaggtggcctaaacattcatgtagcagtttaatcaggtaaccaaggtggccttaa |
7431323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 14606036 - 14605830
Alignment:
| Q |
32 |
attgcagcagtatatgtagtttctctacctaaagagtgtactgatgtagaaaacaaattaattccatgtaatcagaattctctgccaacaatgctaatta |
131 |
Q |
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| T |
14606036 |
attgcaggagcatatgtagtttctctgcccaaagagtgtactgatgcagaaaacaaattaattccatgtaatcagaattctctgccaactatgctaatta |
14605937 |
T |
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| Q |
132 |
attatatacaattaacctataaaaacaaattaatgcagtcaaacattgcagcctacgtaatcggaatgcttttacaacaaaatcagaccacatattctca |
231 |
Q |
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| T |
14605936 |
attctatacaattagcctataaaaacaaattaatgcagtcaaagattgcagcctacataatcggaatgcttttacaacaaaatcagaccacatgttctca |
14605837 |
T |
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| Q |
232 |
ttacaag |
238 |
Q |
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| T |
14605836 |
ttacaag |
14605830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 26340464 - 26340341
Alignment:
| Q |
112 |
tctgccaacaatgctaattaattatatacaattaacctataaaaacaaattaatgcagtcaaacattgcagcctacgtaatcggaatgctttta-caaca |
210 |
Q |
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||||||| | ||||||||||||| |||||||||| ||||| |||||||||||||| ||||||| ||| |||||| |||||| |||||| | | || || |
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| T |
26340464 |
tctgccagctatgctaattaattctatacaattagcctattaaaacaaattaatgtagtcaaagattttagcctatgtaatcacaatgctctaatcatca |
26340365 |
T |
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| Q |
211 |
aaatcagaccacatattctcatta |
234 |
Q |
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|||| |||||| ||| |||||||| |
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| T |
26340364 |
aaataagaccaaatactctcatta |
26340341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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