View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_69 (Length: 321)
Name: NF21553_low_69
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 32248538 - 32248288
Alignment:
| Q |
14 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggagatggaatgttgtccttattgagaagaggtttggaacttcccttcaat |
113 |
Q |
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| T |
32248538 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtagaaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaat |
32248439 |
T |
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| Q |
114 |
gaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatc---ttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
210 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32248438 |
gaggtaatgtagaagttgcttctttttttataagtcttttttgatgtaccatctaattggtgaaggaaatgcttttgagcatggctagcaacttgacttg |
32248339 |
T |
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| Q |
211 |
cagttcttgtacgaacatgttgtgaaatctttttccaatttcccttcttat |
261 |
Q |
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| T |
32248338 |
cagttcttgtacgaacatgttgtgaaatcattttccaatttcccttcttat |
32248288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 32236344 - 32236098
Alignment:
| Q |
14 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggagatggaatgttgtccttattgagaagaggtttggaacttcccttcaat |
113 |
Q |
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| T |
32236344 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtagaaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaat |
32236245 |
T |
|
| Q |
114 |
gaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatc---ttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
210 |
Q |
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| T |
32236244 |
gaggtaatgtagaagttgcttctttttttataagtcttttttgatgtaccatctaattggtgaaggaaatgcttttgagcatggctagcaacttgacttg |
32236145 |
T |
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| Q |
211 |
cagttcttgtacgaacatgttgtgaaatctttttccaatttcccttc |
257 |
Q |
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| T |
32236144 |
cagttcttgtacgaacatgttgtgaaatcagtttccactttcccttc |
32236098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 32254745 - 32254491
Alignment:
| Q |
2 |
aggagatggaatgttgtccttatagagaagagggtggaaatttccatcccatgaggtaggagga---gatggaatgttgtccttattgagaagaggtttg |
98 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||| ||| |
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| T |
32254745 |
aggaaatggaatgttgtccttatagagaagagggtggaaatttccatcccatgtaggaggaggaggggatggaatgttgtccttatagagaagagggttg |
32254646 |
T |
|
| Q |
99 |
gaacttcccttcaatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgatgtaacatcttggtgaaggaaatgcttttgagcatgactag |
198 |
Q |
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||| ||| |||||||||||||||| ||||||||| | ||| |||||||||||| || || |||||||||||||||||| |||| ||| |
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| T |
32254645 |
gaatctccattcaatgaggtaatgtcaaagttgctt---tttcttttagttttttttgatgtagcactatgatgaaggaaatgcttttgatcatggctac |
32254549 |
T |
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| Q |
199 |
caacttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttcccttctta |
260 |
Q |
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| T |
32254548 |
caacttgacttggagtttttgtactaagatgttctgaaa----ttttcaatttcccttctta |
32254491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 32248865 - 32248909
Alignment:
| Q |
262 |
cactctaaattttgcaaagttgaacatgatttccatcgagaggag |
306 |
Q |
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| T |
32248865 |
cactctaaattttgcaaagttgaacatgatttccatcgagaggag |
32248909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32236297 - 32236239
Alignment:
| Q |
1 |
aaggagatggaatgttgtccttatagagaagagggtggaaatttccatcccatgaggta |
59 |
Q |
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|||||||||||||||||||||||| ||||||||| | | ||||||| | | |||||||| |
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| T |
32236297 |
aaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaatgaggta |
32236239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32248491 - 32248433
Alignment:
| Q |
1 |
aaggagatggaatgttgtccttatagagaagagggtggaaatttccatcccatgaggta |
59 |
Q |
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|||||||||||||||||||||||| ||||||||| | | ||||||| | | |||||||| |
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| T |
32248491 |
aaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaatgaggta |
32248433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 256
Target Start/End: Original strand, 37027805 - 37027885
Alignment:
| Q |
176 |
gaaatgcttttgagcatgactagcaacttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttccctt |
256 |
Q |
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|||||||||||||||||| |||||||||||| ||| |||| |||||| ||||||||||| ||||||| |||| |||||||| |
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| T |
37027805 |
gaaatgcttttgagcatggctagcaacttgagttgtagtttttgtaccaacatgttgtgcaatctttatccattttccctt |
37027885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 37027670 - 37027724
Alignment:
| Q |
2 |
aggagatggaatgttgtccttatagagaagagggtggaaatttccatcccatgag |
56 |
Q |
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| T |
37027670 |
aggagatggaatgttgtccctatagagaagagggtgaaaatttccatcccatgag |
37027724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 23193955 - 23193907
Alignment:
| Q |
18 |
tccttatagagaagagggtggaaatttccatcccatgaggtaggaggag |
66 |
Q |
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| T |
23193955 |
tccttatagagaagaggttggaaatttccatcccataaggtatgaggag |
23193907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 23193803 - 23193760
Alignment:
| Q |
167 |
ttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
210 |
Q |
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| T |
23193803 |
ttggtgaaggaaagtcttttgagcatggctagcaacttgacttg |
23193760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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