View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_71 (Length: 316)
Name: NF21553_low_71
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 28606756 - 28606476
Alignment:
| Q |
9 |
gaagaatataaatcatcagagtcggagactgaggaatcaaatgacgatgcatatgatcccattaaggagaactatcattattttgtaatgccaaaaaatt |
108 |
Q |
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| T |
28606756 |
gaagaatgtaaatcatcagagtcgaagactaaggaatcaaataacgatgcatatgatgacattaaggagaactatcattctttagtaatgccaaaaattt |
28606657 |
T |
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| Q |
109 |
tatgtgagaaatgtatatagcaagttaatggacacatatgcttgtttttgaatgacaacttaatagaagagtaacgatatacactattattaacataaag |
208 |
Q |
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| T |
28606656 |
tatgtgagaaatgtatatagcaagttaatggacacatatgcttgtttttaaatgacaacttaatagaagagtaacgatatacactattactaacataaaa |
28606557 |
T |
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| Q |
209 |
gaccaatttcaaattgacaaaaccttaaaggactaatctaatacaaatattaaaattaaagaatctcgagatgaatttgac |
289 |
Q |
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| T |
28606556 |
gaccaatttcaacttgacaaaaccttaaaggactaatctaatacaaatattaaaattaaagaagctcgagatgaatttgac |
28606476 |
T |
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