View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_low_74 (Length: 297)

Name: NF21553_low_74
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_low_74
NF21553_low_74
[»] chr4 (3 HSPs)
chr4 (92-290)||(48074966-48075189)
chr4 (20-89)||(48074867-48074936)
chr4 (33-89)||(48084292-48084349)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 92 - 290
Target Start/End: Original strand, 48074966 - 48075189
Alignment:
Q  92 gttgttgtttatgtgaacagtaactcaaactcaaagacaatgatgatgaatataagtgaagaa--------------gactgaatggtcggtgtcagaaa 177  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||              ||||||||||||||||||||||     
T  48074966 gttgttgtttatgtgaacagttactcaaactcaaag-caaggatgatgaatataagtgaagaacaagaggcaaagaagactgaatggtcggtgtcagaag 48075064  T
Q  178 catacttat------------tatatgtgcttgtattacttacttgatataccttgctaccttagtacccgtaccttaatacccgtgtgcctcgcgcgtt 265  Q
    |||||||||            | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48075065 catacttatatgtggtacgtatgtatgtgcttgtattacttacttgctataccttgctaccttagtacccgtaccttaatacccgtgtgcctcgcgcgtt 48075164  T
Q  266 gcgggatgttcctttattttcttcg 290  Q
    |||||||||||||||||||| ||||    
T  48075165 gcgggatgttcctttattttgttcg 48075189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 48074867 - 48074936
Alignment:
Q  20 atttgaacccatactgcagctccaagtcctacccatggtggtcttgttcctcccttcaccttcaacattg 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48074867 atttgaacccatactgcagctccaagtcctacccatggtggtcttgttcctcccttcaccttcaacattg 48074936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 48084292 - 48084349
Alignment:
Q  33 ctgcagctccaagtcctaccca-tggtggtcttgttcctcccttcaccttcaacattg 89  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||    
T  48084292 ctgcagctcctagtcctactcaatggtggtcttgttcctcccttcaccttcaacattg 48084349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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