View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21553_low_75 (Length: 285)

Name: NF21553_low_75
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21553_low_75
NF21553_low_75
[»] chr3 (3 HSPs)
chr3 (29-269)||(14175073-14175313)
chr3 (29-251)||(952517-952738)
chr3 (220-268)||(5565243-5565291)
[»] scaffold0007 (1 HSPs)
scaffold0007 (83-269)||(257697-257883)
[»] chr4 (4 HSPs)
chr4 (89-237)||(10715051-10715199)
chr4 (89-237)||(10928821-10928969)
chr4 (36-71)||(10715002-10715037)
chr4 (36-71)||(10928772-10928807)
[»] chr7 (1 HSPs)
chr7 (127-214)||(11637791-11637878)
[»] chr8 (1 HSPs)
chr8 (103-183)||(38442662-38442742)
[»] chr2 (1 HSPs)
chr2 (103-185)||(38955295-38955376)
[»] chr1 (1 HSPs)
chr1 (103-185)||(22964541-22964622)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 14175073 - 14175313
Alignment:
Q  29 tccgctgtcgtcgatgaatttcgtaaatttgaaatctttttcgnnnnnnnnnnncatctgggttttagtttttataaggagggaagtgaaacctaaccgc 128  Q
    |||||||||||||| ||||||||||||||||||||||||||||           ||||||| ||||  ||||||||||||||||||||||||||||||||    
T  14175073 tccgctgtcgtcgacgaatttcgtaaatttgaaatctttttcgttttttttttgcatctggattttcatttttataaggagggaagtgaaacctaaccgc 14175172  T
Q  129 ggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaatgtttttccgacgc 228  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  14175173 ggcaatggttttagcgaaggaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcagcggcggtgatgaaagtgtttccgacgc 14175272  T
Q  229 ggtggtcaatcaaagtggtgcaactccggcgtggtggaaag 269  Q
    |||||||||    | ||||||||||||||||||||||||||    
T  14175273 ggtggtcaacgtcaatggtgcaactccggcgtggtggaaag 14175313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 952517 - 952738
Alignment:
Q  29 tccgctgtcgtcgatgaatttcgtaaatttgaaatctttttcgnnnnnnnnnnncatctgggttttagtttttataaggagggaagtgaaacc-taaccg 127  Q
    |||||||||||||| ||||||||||||||||||||||||||||            ||||||||||| |||||| ||||||||||||||||||| ||||||    
T  952517 tccgctgtcgtcgacgaatttcgtaaatttgaaatctttttcgtttttttttt--atctgggttttcgtttttgtaaggagggaagtgaaaccctaaccg 952614  T
Q  128 cggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaatgtttttccgacg 227  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  952615 cggtgatggttttagcgaagaaaataacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaaaatgtttccgacg 952714  T
Q  228 cggtggtcaatcaaagtggtgcaa 251  Q
    ||||||||||  | ||||||||||    
T  952715 cggtggtcaacgacagtggtgcaa 952738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 5565291 - 5565243
Alignment:
Q  220 ttccgacgcggtggtcaatcaaagtggtgcaactccggcgtggtggaaa 268  Q
    ||||||||| ||||||||  |  ||||||||||||||||||||||||||    
T  5565291 ttccgacgcagtggtcaacgacggtggtgcaactccggcgtggtggaaa 5565243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 83 - 269
Target Start/End: Complemental strand, 257883 - 257697
Alignment:
Q  83 catctgggttttagtttttataaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcg 182  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  257883 catctggattttcgtttttataaggagggaagtgaaacataaccgcggcgatggttttagcgaagaaaacaacaccaacatcattaatttatctccatcg 257784  T
Q  183 gagttgacggattcagcggcggcggtgatgaatgtttttccgacgcggtggtcaatcaaagtggtgcaactccggcgtggtggaaag 269  Q
    ||||||||||||| |||  ||||||||||||| || |||||||||| ||||||||  | ||||||  ||||||||||||| ||||||    
T  257783 gagttgacggatttagcaacggcggtgatgaaagtgtttccgacgcagtggtcaacgacagtggtttaactccggcgtggaggaaag 257697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 10715051 - 10715199
Alignment:
Q  89 ggttttagtttttataaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttg 188  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  10715051 ggttttcgtttttataagaagggaagtgaatcctaaccgcggcgatggttttagtgaagacaacaacaccaacatcattaatttatctccatcggagttg 10715150  T
Q  189 acggattcagcggcggcggtgatgaatgtttttccgacgcggtggtcaa 237  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||||    
T  10715151 acggattcagcggcggcggtgatgaaagtgttttcgacgcggtggtcaa 10715199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 10928821 - 10928969
Alignment:
Q  89 ggttttagtttttataaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttg 188  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  10928821 ggttttcgtttttataagaagggaagtgaatcctaaccgcggcgatggttttagtgaagacaacaacaccaacatcattaatttatctccatcggagttg 10928920  T
Q  189 acggattcagcggcggcggtgatgaatgtttttccgacgcggtggtcaa 237  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||||    
T  10928921 acggattcagcggcggcggtgatgaaagtgttttcgacgcggtggtcaa 10928969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 10715002 - 10715037
Alignment:
Q  36 tcgtcgatgaatttcgtaaatttgaaatctttttcg 71  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10715002 tcgtcgacgaatttcgtaaatttgaaatctttttcg 10715037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 10928772 - 10928807
Alignment:
Q  36 tcgtcgatgaatttcgtaaatttgaaatctttttcg 71  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10928772 tcgtcgacgaatttcgtaaatttgaaatctttttcg 10928807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 11637791 - 11637878
Alignment:
Q  127 gcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaa 214  Q
    |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11637791 gcggcgatggttatagcgaagaaaacaacaccggcaacattaatttatctccatcggagttgacggatccagcggcggcggtgatgaa 11637878  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 38442662 - 38442742
Alignment:
Q  103 taaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcgg 183  Q
    |||| |||||||||||||||||| | | | | ||||| |||||||||||||||||| | | ||||||||||||||||||||    
T  38442662 taagtagggaagtgaaacctaacagggacaagggtttcagcgaagaaaacaacaccaaaaacattaatttatctccatcgg 38442742  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 38955295 - 38955376
Alignment:
Q  103 taaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggag 185  Q
    |||||| ||||||||||  |||| | ||||||||||| || |||||||||||||||   | ||||||||||||||||||||||    
T  38955295 taaggatggaagtgaaaa-taacaggggcgatggtttcagagaagaaaacaacaccagaaacattaatttatctccatcggag 38955376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 22964622 - 22964541
Alignment:
Q  103 taaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggag 185  Q
    ||||||||||| |||||  |||| | || |||||||| || ||||||||||||||| | | ||||||||||||||||||||||    
T  22964622 taaggagggaattgaaaa-taacaggggtgatggtttcagagaagaaaacaacaccaaaaacattaatttatctccatcggag 22964541  T

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