View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_79 (Length: 276)
Name: NF21553_low_79
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 5830001 - 5829915
Alignment:
| Q |
117 |
ttacccttaatgaaattaataaaaaatgccacatatgagtggtacaagaatggtttgccacctatggtggttcttgtatcattgctc |
203 |
Q |
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| T |
5830001 |
ttacccttaatgaaattaataaaaaatgccacatatgagtggtacaagaatggtttgccacctatggtggttcttgtatcattgctc |
5829915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 42434177 - 42434117
Alignment:
| Q |
117 |
ttacccttaatgaaattaataaaaaatgccacatatgagtggtacaagaatggtttgccac |
177 |
Q |
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| T |
42434177 |
ttacccttactgaaattaataaaaaatgccacatatgactcgtacaagagtggtttgccac |
42434117 |
T |
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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 9618032 - 9617945
Alignment:
| Q |
117 |
ttacccttaatgaaattaataaaaaatgccacatatgagtggtacaagaatgg-tttgccacctatggtggttcttgtatcattgctc |
203 |
Q |
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| T |
9618032 |
ttacccttaatgaaattaataaaaaatgccacatatgagtggtacaagaatggttttgccacctatggtggttggtgtatcattgctc |
9617945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 34819706 - 34819647
Alignment:
| Q |
118 |
tacccttaatgaaattaataaaaaatgccacatatgagtggtacaagaatggtttgccac |
177 |
Q |
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| T |
34819706 |
tacccttgctgaaattaataaaaaataccacatatgagtggtacaagagtggtttgccac |
34819647 |
T |
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 29752042 - 29752108
Alignment:
| Q |
204 |
ttttacttaaccatggtcatacatactctaaattataatttaatattatttgtccggtattcttctt |
270 |
Q |
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| T |
29752042 |
ttttgcttaaccatggtcgtacatactctaaattataatttaatattatttgtctggtattcttctt |
29752108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 30129810 - 30129846
Alignment:
| Q |
117 |
ttacccttaatgaaattaataaaaaatgccacatatg |
153 |
Q |
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| T |
30129810 |
ttacccttaataaaattaattaaaaatgccacatatg |
30129846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 37864035 - 37863976
Alignment:
| Q |
118 |
tacccttaatgaaattaataaaaaatgccacatatgagtggtacaagaatggtttgccac |
177 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
37864035 |
tacccttgctgaaattaataaaaaataccacatatgagtggtacaagagtggtttgccac |
37863976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 6310250 - 6310286
Alignment:
| Q |
117 |
ttacccttaatgaaattaataaaaaatgccacatatg |
153 |
Q |
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||||||||||| |||||||| |||||||||||||||| |
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| T |
6310250 |
ttacccttaataaaattaattaaaaatgccacatatg |
6310286 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 3776377 - 3776321
Alignment:
| Q |
117 |
ttacccttaatgaaattaataaaaaatgccacatatgagtggtacaagaatggtttg |
173 |
Q |
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||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||| |
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| T |
3776377 |
ttacccttactgaaattaataaaaaatgccacatataaatggtataagaatggtttg |
3776321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 4120812 - 4120770
Alignment:
| Q |
117 |
ttacccttaatgaaattaataaaaaatgccacatatgagtggt |
159 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4120812 |
ttacccttaatgaaattaataaaaaataccacatatgagtggt |
4120770 |
T |
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