View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_88 (Length: 257)
Name: NF21553_low_88
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_88 |
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| [»] scaffold0311 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 31389939 - 31389709
Alignment:
| Q |
12 |
aagaattcttcctacaatatacaaacatcaacatcaagtcaaactgttttcataagctaatggacatgtcataagttgtttacataagctttcgcagaaa |
111 |
Q |
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| T |
31389939 |
aagaattcttcctacaatatacaaacatcaacatatagtcaaactgtttttataagctaatggacatgtcataagttgtttacacaagctctcacagaaa |
31389840 |
T |
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| Q |
112 |
ttgtcacgactcgcgagtgcttatgtcagtagataagttcaaaactcatagaccacacatgtaagtaactcaccaaactgtctccaatttcgcatttggt |
211 |
Q |
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| T |
31389839 |
ttgtcacgactcgcgagtgcttatgtcagtagataagttcaaaacacatagaccacacatgtaagtaactcaccaaactgtctccgatttcgcatttggt |
31389740 |
T |
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| Q |
212 |
tatgactgaagtactctttgcccttgaaaat |
242 |
Q |
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| T |
31389739 |
tatcactgaagtactctttgcccttgaaaat |
31389709 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 31875606 - 31875573
Alignment:
| Q |
71 |
atggacatgtcataagttgtttacataagctttc |
104 |
Q |
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| T |
31875606 |
atggacatgtcataagttgtttccataagctttc |
31875573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 10628 - 10596
Alignment:
| Q |
71 |
atggacatgtcataagttgtttacataagcttt |
103 |
Q |
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| T |
10628 |
atggacatgtcattagttgtttacataagcttt |
10596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 32917250 - 32917286
Alignment:
| Q |
65 |
aagctaatggacatgtcataagttgtttacataagct |
101 |
Q |
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| T |
32917250 |
aagcttatggacatgtcataagttgtttccataagct |
32917286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 2996626 - 2996662
Alignment:
| Q |
65 |
aagctaatggacatgtcataagttgtttacataagct |
101 |
Q |
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| T |
2996626 |
aagcttatggacatgtcataagttgttttcataagct |
2996662 |
T |
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