View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_89 (Length: 257)
Name: NF21553_low_89
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_89 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 32654219 - 32654463
Alignment:
| Q |
2 |
aatgagaacttcaataaattattcatttagtttagagcaaaaatcatcaatacatctacctccaacaatgaatgtggactttgatgccacggttgggatt |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32654219 |
aatgagaacttcaataaattattcatttagtttagagcaaaaatcatcaatacctctacctccaacaatgaatgtggactttgatgccacggttgggatt |
32654318 |
T |
|
| Q |
102 |
ggaatagctaataaatcagtaatcatctctgacaatgtcttctttcnnnnnnnnnnnnnnnnnctttttacaatgtcatgctgttctttcaccactaacc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
32654319 |
ggaatagctaataaatcagtaatcatctctgacaatgtcttctttc-----aaaaaaataaaacttttgacaatgtcatgctgttctttcaccactaacc |
32654413 |
T |
|
| Q |
202 |
gagttactgttgggaacataaataccttcatcgaaaacttggcttcagag |
251 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32654414 |
gagttactgctgggaacataaataccttcatcgaaaacttggcttcagag |
32654463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 4482537 - 4482655
Alignment:
| Q |
2 |
aatgagaacttcaataaattattcatttagtttagagcaaaaatcatcaatacatctacctccaacaatgaatgtggactttgatgccacggttgggatt |
101 |
Q |
| |
|
||||||| |||||| | ||| |||||||| | |||||| ||| ||||| ||| |||||||||| || |||||||||||| |||||| || |||| |||| |
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| T |
4482537 |
aatgagagcttcaacagattcttcatttaatctagagcgaaattcatcgataactctacctccagcactgaatgtggactctgatgcaacagttgagatt |
4482636 |
T |
|
| Q |
102 |
ggaatagctaataaatcag |
120 |
Q |
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|||||||||| || ||||| |
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| T |
4482637 |
ggaatagctagtatatcag |
4482655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 33449279 - 33449170
Alignment:
| Q |
2 |
aatgagaacttcaataaattattcatttagtttagagcaaaaatcatcaatacatctacctccaacaatgaatgtggactttgatgccacggttgggatt |
101 |
Q |
| |
|
||||||| |||||| | ||| |||||||| | |||||| ||| ||||| ||| ||||||||||||| |||||||||||| ||||| || |||| |||| |
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| T |
33449279 |
aatgagagcttcaacagattcttcatttaatctagagcgaaattcatcgataactctacctccaacactgaatgtggactcggatgcaacagttgagatt |
33449180 |
T |
|
| Q |
102 |
ggaatagcta |
111 |
Q |
| |
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|||||||||| |
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| T |
33449179 |
ggaatagcta |
33449170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 26107265 - 26107383
Alignment:
| Q |
2 |
aatgagaacttcaataaattattcatttagtttagagcaaaaatcatcaatacatctacctccaacaatgaatgtggactttgatgccacggttgggatt |
101 |
Q |
| |
|
||||||| |||||| | ||| |||||||| | |||||| ||| ||||| ||| |||||||||| || |||||||||||| ||||| || |||| |||| |
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| T |
26107265 |
aatgagagcttcaacagattcttcatttaatctagagcgaaattcatcgataactctacctccagcactgaatgtggactcggatgcaacagttgagatt |
26107364 |
T |
|
| Q |
102 |
ggaatagctaataaatcag |
120 |
Q |
| |
|
|||||||||| || ||||| |
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| T |
26107365 |
ggaatagctactatatcag |
26107383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 34432190 - 34432104
Alignment:
| Q |
34 |
tagagcaaaaatcatcaatacatctacctccaacaatgaatgtggactttgatgccacggttgggattggaatagctaataaatcag |
120 |
Q |
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|
|||||||||| ||||| ||| ||||||||||||| |||||||||||| ||||| || |||| |||||||||||||| || ||||| |
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|
| T |
34432190 |
tagagcaaaattcatcgataactctacctccaacactgaatgtggactcggatgcaacagttgagattggaatagctagtatatcag |
34432104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 20483611 - 20483505
Alignment:
| Q |
2 |
aatgagaacttcaataaattattcatttagtttagagcaaaaatcatcaatacatctacctccaacaatgaatgtggactttgatgccacggttgggatt |
101 |
Q |
| |
|
||||||| |||||||| ||| |||||||| | |||||| ||| ||||| ||| |||||||||| || |||||||||||| ||||| || ||| |||| |
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| T |
20483611 |
aatgagagcttcaatagattcttcatttaatctagagcgaaattcatcgataactctacctccagcactgaatgtggactcggatgcaacaattgagatt |
20483512 |
T |
|
| Q |
102 |
ggaatag |
108 |
Q |
| |
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||||||| |
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|
| T |
20483511 |
ggaatag |
20483505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 7459605 - 7459714
Alignment:
| Q |
2 |
aatgagaacttcaataaattattcatttagtttagagcaaaaatcatcaatacatctacctccaacaatgaatgtggactttgatgccacggttgggatt |
101 |
Q |
| |
|
||||||| |||||| | ||| |||||||| | |||||| ||| ||||| ||| |||||||||| || |||||||||||| ||||| || ||| |||| |
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| T |
7459605 |
aatgagagcttcaacagattcttcatttaatctagagcgaaattcatcgataactctacctccagcactgaatgtggactcggatgcaacaattgagatt |
7459704 |
T |
|
| Q |
102 |
ggaatagcta |
111 |
Q |
| |
|
|||||||||| |
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|
| T |
7459705 |
ggaatagcta |
7459714 |
T |
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