View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_9 (Length: 659)
Name: NF21553_low_9
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 22 - 601
Target Start/End: Original strand, 28100462 - 28101041
Alignment:
| Q |
22 |
ctgcaaagcataatgcaaactttcaattttatctataactcactttataataagtaagcgtagttaactattcattagtctataatatcacactatcaac |
121 |
Q |
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| T |
28100462 |
ctgcaaagcataatgcaaactttcaattttatctataactaactttatcataaataagcgtagttaactattcattagtctataatatcacactatcaac |
28100561 |
T |
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| Q |
122 |
agtacgcacctcaggttcaacaatgtcgaattcaacagtgttcgatttcaaatcaactataagttgaatcataagtcataactacacacatcacaaacaa |
221 |
Q |
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| T |
28100562 |
agtacgcacctcaggttcaacaatgtcgaattcaacagtgttcgatttcaaatcaactataagttgaatcataagtcataactacacacatcacaaacaa |
28100661 |
T |
|
| Q |
222 |
aaccaaaaacaataaattaaagcataattacttacacataagattttgaatagatcataagataagttctgatcgcgtatcagatgctaagtttcacaat |
321 |
Q |
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| T |
28100662 |
aaccaaaaacaataaattaaagcataattacttacacataagattttgaatagatcataagataagttctgatcgcgtatcagatgctaagtctcacaat |
28100761 |
T |
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| Q |
322 |
acaacttcnnnnnnngaatccaaaaagggctagagttcgtcgttcttgctagtcaaaaaaggaatccaaagagggctagagattgttgttcttgctagaa |
421 |
Q |
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| T |
28100762 |
acaacttcaaaaaaagaatccaaaaagggctagagtttgtcgttcttgctagtcaaaaaaggaatccaaagggggctagagattgtcgttcttgctagaa |
28100861 |
T |
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| Q |
422 |
aaatttactattgtgactgtatggttaatttggagagctagaaacggcagtttgttcaataatagggtacttttagtacaagaagtggttgagaaaatta |
521 |
Q |
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| T |
28100862 |
aaatttactattgtgactgtatggtcaatttggagagctagaaacggcagtttgttcaataatagggtacttttagtacaagaagtggttgagaaaatta |
28100961 |
T |
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| Q |
522 |
aggtgttcgtggcgttggttccctggtcgaggagtttggtttccatgtatgaattacaaatggatgttgtatcctcaaag |
601 |
Q |
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| T |
28100962 |
aggtgttcgtggcgttggttccttggtcgaggagtttggtttccatgtatgtattacaaatggatgttgtatcctcaaag |
28101041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 398 - 601
Target Start/End: Original strand, 28103582 - 28103790
Alignment:
| Q |
398 |
tagagattgttgttcttgctagaaaaatttactattgtgactgtatggttaatttggagagctagaaacggcagtttgttcaataa-----tagggtact |
492 |
Q |
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| T |
28103582 |
tagagatcgtcgttcttgctaaaaaaatttactactgtaactgtatggtcaatttggagagctaggaacgaccgtttgttcaatgaattgatagggtact |
28103681 |
T |
|
| Q |
493 |
tttagtacaagaagtggttgagaaaattaaggtgttcgtggcgttggttccctggtcgaggagtttggtttccatgtatgaattacaaatggatgttgta |
592 |
Q |
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| T |
28103682 |
ttcggtacaagaagtgtttgagaaaattaaggtgttcgtggtggtggttccttggccaaggagtttcgtttccatgtatttattacaaaggggtgtggga |
28103781 |
T |
|
| Q |
593 |
tcctcaaag |
601 |
Q |
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| T |
28103782 |
tcctcaaag |
28103790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 597 - 659
Target Start/End: Complemental strand, 28101098 - 28101036
Alignment:
| Q |
597 |
caaagaactcaacccctcgccacattgaaaagtgagataaattagttgaccatacacctttga |
659 |
Q |
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| T |
28101098 |
caaagaactcaccccctcgccacattgaaaagtgagataaattagttgaccatacacctttga |
28101036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 33781160 - 33781092
Alignment:
| Q |
127 |
gcacctcaggttcaacaatgtcgaattcaacagtgttcgatttcaaatcaactataagttgaatcataa |
195 |
Q |
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| T |
33781160 |
gcacctcagtttcaacaatatcaagttcatcaatgttcgatttcaaatcaacaagaggttgaatcataa |
33781092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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