View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21553_low_90 (Length: 256)
Name: NF21553_low_90
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 37911390 - 37911610
Alignment:
| Q |
18 |
aagaacagaattaatgctaaaatcatgaagcattttattatagatgtactgcaaaattggtgatattgattaaacatatgaacaaaagacaagacaaaaa |
117 |
Q |
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| T |
37911390 |
aagaacagaattaatgctaaaatcatgaagcattttatta-agatgtactgcaaaattggtgatattgattaaacatatgaacaaaagacaagacaataa |
37911488 |
T |
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| Q |
118 |
gcgagggggaaatatatatatacacagaaaaacaatcaatgacatacctcttttgagctgcacgtctggggcatttctcaaaacaaatgacattgcctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911489 |
gcgagggggaaatatatatatacacagaaaaacaatcaatgacatacctcttttgagctgcacgtctggggcatttctcaaaacaaatgacattgcctct |
37911588 |
T |
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| Q |
218 |
gccatgaattgtcgaacatatt |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
37911589 |
gccatgaattgtcgaacatatt |
37911610 |
T |
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