View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_low_93 (Length: 249)
Name: NF21553_low_93
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_93 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10506278 - 10506039
Alignment:
| Q |
1 |
tgatttgaagggtgatgctagaactcaatggagaattggaccgtttggttcttttaaattcgggtgtaaacttgagtgccaacttaaatttcatcctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10506278 |
tgatttgaagggtgatgctagaactcaatggagaattggaccgtttggttcttttaaattcgggtgtaaacttgagtgtcaacttaaatttcatcctctt |
10506179 |
T |
|
| Q |
101 |
aatggtagttatattccttcacgttgcacttctcaaaccaaatgattctttctttgtttccattttgttttgactatgttattgttatgtataatcaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
10506178 |
aatggtagttatattccttcacgttgcacttctcaatccaaatgattctttctttgtttccattttgttttgactatgttattgttatgtataaacaaaa |
10506079 |
T |
|
| Q |
201 |
ttggacatagtctcattctcattctcttctatttttctct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10506078 |
ttggacatagtctcattctcattctcttctatgtttctct |
10506039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University