View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21553_low_94 (Length: 245)
Name: NF21553_low_94
Description: NF21553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21553_low_94 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 32248682 - 32248909
Alignment:
| Q |
1 |
attgcactcttttccttcgtgaggatttatcctacttcttgggttttggtctagtccccccaagatgtttattgtatttctttatctatcaataaatttg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32248682 |
attgcactctattccttcgtgaggatttatcctacttcttgggttttggtctagtctccc-aagatgtttattgtatttaattatctatcaataaatttg |
32248780 |
T |
|
| Q |
101 |
ttagtttgttgcaaattatagtagtgaatttggggtgttaatctaattaggattaggatatcaagtttttcttctaatgtccatgcactctaaattttgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248781 |
ttagtttgttgcaaattatagtagtgaattttgggtgttaat-taattaggattaagatatcaagtttttcttctaatgtccatgcactctaaattttgc |
32248879 |
T |
|
| Q |
201 |
aaagttgaacatgatttccatcgagaggag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32248880 |
aaagttgaacatgatttccatcgagaggag |
32248909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 32236485 - 32236620
Alignment:
| Q |
43 |
gttttggtctagtccccccaagatgtttattgtatttctttatctatcaataaatttgttagtttgttgcaaattatagtagtgaatttggggtgttaat |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32236485 |
gttttggtctagtccccccaagatgtttattgtatatctttctctatcaataaatttgttagtttgttgcaaattatagtagtgaattttgggtgttaat |
32236584 |
T |
|
| Q |
143 |
ctaattaggattaggatatcaagtttttcttctaat |
178 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32236585 |
ctaattaggattatgatatcaagtttttcttctaat |
32236620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32254951 - 32255164
Alignment:
| Q |
1 |
attgcactcttttccttcgtgaggatttatcctacttcttgggttttggtctagtccccccaagatgtttattgtatttctttatctatcaataaatttg |
100 |
Q |
| |
|
||||||||||||| |||| |||| ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
32254951 |
attgcactctttttcttcatgagcggttatcctacttcttgggttttggtctatcccttccaagatttttattgtatttcttta--tgtcaataaatttg |
32255048 |
T |
|
| Q |
101 |
ttagtttgttgcaaattata-gtagtgaatttggggtgttaatctaattaggattaggatatcaagtttttcttctaatgtccatgcactctaaattttg |
199 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||| |||||| || || |||||||| |||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
32255049 |
ttagggtgttgcaaatgataggtagtgaattttgggtgtcaactta------attaggatgtcaactttttcttctgatgtccatgcactctaatatttg |
32255142 |
T |
|
| Q |
200 |
caaagttgaacatgatttccat |
221 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
32255143 |
caaagttgaacatgattcccat |
32255164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 23202952 - 23203096
Alignment:
| Q |
72 |
ttgtatttctttatctatcaataaatttgttagtttgttgcaaattatag-tagtgaatttggggtgttaatctaattaggattaggatatcaagttttt |
170 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||| |||| || ||||||| || | | || ||| ||||||| ||||| | | |
|
|
| T |
23202952 |
ttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaatttaggatctcaacctagttaggatg------tcaagctcat |
23203045 |
T |
|
| Q |
171 |
cttctaatgtccatgcactctaaattttgcaaagttgaacatgatttccat |
221 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
23203046 |
catctaatgcccatgcactctaatttttgcaaagttgaacatgacttccat |
23203096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University