View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21554_high_16 (Length: 231)
Name: NF21554_high_16
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_high_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 29135920 - 29135690
Alignment:
| Q |
1 |
tgttgtttttgctgaggaacattaggagaggttgcacttgcagcagttttgttcttgttttggagggaacaacaaataggcgtcgttttttcctcaactg |
100 |
Q |
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| T |
29135920 |
tgttgtttttgctgaggaacattaggagaggttgcacttgcagcagttttgttcttgttttggagggaacaacaaataggcgtcgttttttcctcaactg |
29135821 |
T |
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| Q |
101 |
tggccattgcaaaggattagcaagctcaccgtagtaaattccactgtaatattccactgacatacagtaatagtattcacacttgtttcaccttccttcc |
200 |
Q |
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| T |
29135820 |
tggccattgcaaaggattagcaagctcaccgtagtaaattccactgtaatattccactgacatacagtaatagtattcacacttgtttcaccttccttcc |
29135721 |
T |
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| Q |
201 |
ttccaccactctcactctcaatgccaagatc |
231 |
Q |
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| T |
29135720 |
ttccaccactctcaccctcaatgccaagatc |
29135690 |
T |
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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 14294528 - 14294439
Alignment:
| Q |
78 |
aggcgtcgttttttcctcaactgtggccattgcaaaggattagcaagctcaccgtagtaaattccactgtaatattccactgacatacag |
167 |
Q |
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||||||||||||||||| | |||||||||||| |||| ||||||||||||||||| ||| | |||||| |||||||||||||||||| |
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| T |
14294528 |
aggcgtcgttttttcctgagctgtggccattgtgaagggttagcaagctcaccgtacaaaactgtactgtagtattccactgacatacag |
14294439 |
T |
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