View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21554_high_2 (Length: 597)
Name: NF21554_high_2
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 21 - 516
Target Start/End: Original strand, 40846775 - 40847271
Alignment:
| Q |
21 |
attggttgctcagttctaaggtactatcgaaggaaaaggacttcaagaaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846775 |
attggttgctcagttctaaggtactatcgaaggaaaaggacttcaagaaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaa |
40846874 |
T |
|
| Q |
121 |
agagttaagcttaacaaatgtattgaacaaaaacatggtatggagtatatgcttcattttcaaaaataaaatatacttcaattaagttcaagcagtgatt |
220 |
Q |
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| T |
40846875 |
agagttaagcttaacaaatgtattgaacaaaaacatggtatggagtatatgcttcattttcaaaaataaaatatacttcaattaagttcaagcagtgatt |
40846974 |
T |
|
| Q |
221 |
tttcacttttaaaatcatctataaa-gtttctcaaacatgagacaattacttgataaaacgatggacatttaacaaaatatgtcttgggaagtttacaat |
319 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40846975 |
tttcacttttaaaatcatctataaaagtttctcaaacatgagacaattacttgataaaacgatggaaatttaacaaaatatgtcttgggaagtttacaat |
40847074 |
T |
|
| Q |
320 |
ccatttattataaaaataaataaatcaaaacactcatctatgtggtagttcttaataaccataatcttcaacctcttagataaagctttacgcatagaaa |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40847075 |
ccatttattataaaaataaataaatcaaaacactcatctatttggtagttcttaataaccataatcttcaacctcttagataaagctttacgcatagaaa |
40847174 |
T |
|
| Q |
420 |
aacaattaactatatatgtattcctccgattggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaacaccaaccttt |
516 |
Q |
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| T |
40847175 |
aacaattaactatatatgtatttctccgattggaagaagactttcattataaataaccatttgacaacattcatgtctttctttaacaccaaccttt |
40847271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 151 - 559
Target Start/End: Original strand, 40842733 - 40843132
Alignment:
| Q |
151 |
aaacatggtatggagtatatgcttcattttcaaaaataaaatatacttcaattaagttcaagcagtgatttttcacttttaaaatcatctataaagtttc |
250 |
Q |
| |
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|||||||||| | |||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
40842733 |
aaacatggtacgaagtatatgcttcgttttcaagaataaaatatatat-aattaagttcaagcagtgatttttcacttttataatcatcta--aagtttc |
40842829 |
T |
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| Q |
251 |
tcaaacatgagacaattacttgataaaacgatggacatttaacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaac |
350 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
40842830 |
tcaaacatgagacaattacttgataaa-cgatggacatttaacaaaatataacatgggaagtttacaatccatttattacaaaaataaataaatcataac |
40842928 |
T |
|
| Q |
351 |
actcatctat---gtggtagttcttaataaccataatcttcaacctcttagataaagctttacgcatagaaaaacaattaactatatatgtattcctccg |
447 |
Q |
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| T |
40842929 |
actcatctatttagtactagttcctaataaccataatcttcaacctcttggataaagctttaggcataggaaaacaattaac----catgcattcctcc- |
40843023 |
T |
|
| Q |
448 |
attggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaacaccaaccttttcaatcatatcggtactcaaattaaaccttt |
547 |
Q |
| |
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|||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||| |
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| T |
40843024 |
---ggaagaaggctctcattatagataaccatttgacaacattcatgtcttcctttaacaccaaccttctcaatcatgtcggtattcaaattaaaccttt |
40843120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 40847265 - 40847315
Alignment:
| Q |
541 |
aacctttccacttcttcgtctatatttaaataaaatatatccctatgcttc |
591 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40847265 |
aacctttccacttcttcgtctatatttaaataaaatatatccctattcttc |
40847315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 45401352 - 45401278
Alignment:
| Q |
68 |
aaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgta |
142 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||||| ||||||||| ||| || |||||||||||| ||||||| |
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| T |
45401352 |
aaactatttatatgtttgacaacaataactaattcatatgaaacacacacagaaaagttaagcttaaaaaatgta |
45401278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 214 - 506
Target Start/End: Original strand, 4040870 - 4041145
Alignment:
| Q |
214 |
agtgatttttcacttttaaaatcatctataaagtttctcaaacatgagacaattacttgataaaacgatggacatttaacaaaatatgtcttgggaagtt |
313 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||| ||||||| | | ||| || || ||||||| ||||||||||||||||| | |||| |||| |
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| T |
4040870 |
agtgatttttcactcttaaaattatc--taaagtttctgaaacatgggctatttatttaat-aaacgatacacatttaacaaaatatgacatgggtagtt |
4040966 |
T |
|
| Q |
314 |
tacaatccatttattataaaaataaataaatcaaaacactcatctatgtggtagttcttaataaccataatcttcaacctcttagataaagctttacgca |
413 |
Q |
| |
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||||||||||||||||| | ||||| |||||| |||||||||||| ||| ||||| ||||| ||||||||||||||| ||||||| || || |
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| T |
4040967 |
tacaatccatttattat--atataaagaaatcataacactcatcta--------ttcctaatatccatactcttcaacctcttaggtaaagctatatgct |
4041056 |
T |
|
| Q |
414 |
tagaaaaacaattaactatatatgtattcctccgattggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaac |
506 |
Q |
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| |||| ||| ||| ||| |||||| | ||||||||||| |||||||||||||||||| | |||||||||| || |||||||||||| |
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| T |
4041057 |
aatgaaaataatcaac----catgcattccttcaattggaagaaggctttcattataaataaccgtctgacaacatttataccttcctttaac |
4041145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 46503118 - 46503051
Alignment:
| Q |
439 |
attcctccgattggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaac |
506 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
46503118 |
attcctccaattggaagaagactttcattataaataaccatttgactacatctatgccttccattaac |
46503051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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