View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21554_high_6 (Length: 464)

Name: NF21554_high_6
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21554_high_6
NF21554_high_6
[»] chr7 (6 HSPs)
chr7 (11-439)||(44115034-44115462)
chr7 (11-387)||(26001659-26002035)
chr7 (53-126)||(14231474-14231547)
chr7 (53-113)||(1264212-1264272)
chr7 (53-157)||(21712915-21713019)
chr7 (53-157)||(26907218-26907322)
[»] chr3 (5 HSPs)
chr3 (11-387)||(21037527-21037903)
chr3 (11-242)||(38894879-38895111)
chr3 (50-153)||(36155022-36155125)
chr3 (53-113)||(17688950-17689010)
chr3 (53-113)||(31687155-31687215)
[»] chr1 (2 HSPs)
chr1 (8-110)||(19252415-19252517)
chr1 (53-157)||(25226214-25226318)
[»] chr5 (1 HSPs)
chr5 (53-157)||(30443346-30443450)
[»] chr8 (1 HSPs)
chr8 (53-126)||(8163401-8163474)


Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 44115462 - 44115034
Alignment:
Q  11 acatcatcaggcctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 110  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44115462 acatcatcaggcctattggcaacaatactactgggacaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 44115363  T
Q  111 taatctcatccacaatcacattcttaggcgtcaaaattgctctatctctgaaaaattctagatcattaatattatgcaaaatagaagggtaaattcactc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44115362 taatctcatccacaatcacattcttaggcgtcaaaattgctctatctctgaaaaattatagatcattaatattatgcaaaatagaagggtaaattcactc 44115263  T
Q  211 tgcaattgacgcaacatgatcacctgaactacgaataagcaaatcgtcggggatacgtacattaatttcatcatcacatacatccccaacaacaccatca 310  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  44115262 tacaattgacgcaacatgatcacctgaactacgaataagcaaatcgtcggggatacgtgcattaatttcatcatcacatgtatccccaacaacaccatca 44115163  T
Q  311 ccaatacacaaaacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcatgttcggtttcaatcagatcattg 410  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  44115162 ccaatacacaaaacccattaaccaaattttcctaattcatcgacatcattacttgaacagccatgtaaaagtctcatgttcggtttcaatcagatcattg 44115063  T
Q  411 tgcaaaaccttgaaacgatcaatgagatc 439  Q
    ||||||||||||||||||||||| |||||    
T  44115062 tgcaaaaccttgaaacgatcaatcagatc 44115034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 26002035 - 26001659
Alignment:
Q  11 acatcatcaggcctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 110  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  26002035 acatcatcaggcctgttagcaacaatactactggggcaaggtgaatcacaactcaaatatgtcctttcttcaccaggtatcaaagacataacataattgt 26001936  T
Q  111 taatctcatccacaatcacattcttaggcgtcaaaattgctctatctctgaaaaattctagatcattaatattatgcaaaatagaagggtaaattcactc 210  Q
    |||| || || ||||||| |||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||||| |||||||||||||||||||| |||||    
T  26001935 taatttcgtcgacaatcaaattcttaggcgtcaaaatagctctatctctaaaaaactctggatcattcatattttgcaaaatagaagggtaaatgcactc 26001836  T
Q  211 tgcaattgacgcaacatgatcacctgaactacgaataagcaaatcgtcggggatacgtacattaatttcatcatcacatacatccccaacaacaccatca 310  Q
    | |||| || ||||||||||||||||||||||  |||||||  |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||    
T  26001835 tacaatagatgcaacatgatcacctgaactacagataagcaggtcgtcggggatatgtacattaattccatcatcacatacatctccaacaacaccatca 26001736  T
Q  311 ccaatacacaaaacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcat 387  Q
    ||||| | ||| |||||||  ||||||||||||||||||| |||||||  | || ||||||| || |||||||||||    
T  26001735 ccaatgcccaatacccattctccaaattttcttaattcatcgacatcagcagttgaacaaccgtgcaaaagtctcat 26001659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 14231547 - 14231474
Alignment:
Q  53 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaat 126  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| ||||||| |||||| |||||    
T  14231547 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacagaacatagttattaacctcatcaacaat 14231474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 1264272 - 1264212
Alignment:
Q  53 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaa 113  Q
    |||||||||||||||||| |||||||||| || || || | |||||||||||| |||||||    
T  1264272 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacataacatagttattaa 1264212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 21713019 - 21712915
Alignment:
Q  53 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 152  Q
    |||||||||||||||||| || ||||||||||| | || | ||||| |  ||||| |||||||||||| ||| | ||| | ||||| ||||||||  |||    
T  21713019 gaatcacaactcaaatatgtcttttcttcaccaagaatgagagacaaattataatcattaatctcatcaacagtgacaattttaggtgtcaaaataactc 21712920  T
Q  153 tatct 157  Q
    |||||    
T  21712919 tatct 21712915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 26907218 - 26907322
Alignment:
Q  53 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 152  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| ||||||| |||||| | |||   ||| ||||| ||||| ||||||     
T  26907218 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacagaacatagttattaacctcatcaaaaattgtatttttaggagtcaatattgctt 26907317  T
Q  153 tatct 157  Q
    |||||    
T  26907318 tatct 26907322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 387
Target Start/End: Original strand, 21037527 - 21037903
Alignment:
Q  11 acatcatcaggcctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |    
T  21037527 acatcatcaggcctattagcaacagtactactggggcaaggtgaatcacaactcaaatatgtcctttcttcaccgggtatcaaagacataacataattgt 21037626  T
Q  111 taatctcatccacaatcacattcttaggcgtcaaaattgctctatctctgaaaaattctagatcattaatattatgcaaaatagaagggtaaattcactc 210  Q
    |||| || |  ||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||    
T  21037627 taatttcgttgacaatcaaattcttaggcgtcaaaatagctctatctctaaaaaactctagatcattcatattatgcaaaatagaagggtaaatgcactc 21037726  T
Q  211 tgcaattgacgcaacatgatcacctgaactacgaataagcaaatcgtcggggatacgtacattaatttcatcatcacatacatccccaacaacaccatca 310  Q
    | |||| || ||||||||||||||||||||||| |||||||  |||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||    
T  21037727 tacaatagatgcaacatgatcacctgaactacggataagcaggtcgtcggggatatgtacattaattccatcatcacatacatctccaacaaccccatca 21037826  T
Q  311 ccaatacacaaaacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcat 387  Q
    ||||||| ||| |||||||  ||||||||||| ||||||| |||||||  |||| ||||||| || ||| |||||||    
T  21037827 ccaatacccaatacccattctccaaattttctcaattcatcgacatcagcacttgaacaaccgtgcaaatgtctcat 21037903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 38894879 - 38895111
Alignment:
Q  11 acatcatcaggcctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 110  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |    
T  38894879 acatcatcaggcctattagcaacaatactaatggggcaaggtgaatcacaactcaaatatgtcctctcttcaccgggtatcaaagacataacataattgt 38894978  T
Q  111 taatctcatccacaatcacattcttaggcgtcaaaattgctctatctct-gaaaaattctagatcattaatattatgcaaaatagaagggtaaattcact 209  Q
    |||| || || ||||||| |||||||||||||||||| |||||||||||  ||||| |||  |||||| |||||||||||||||||||||||||| ||||    
T  38894979 taatttcgtcgacaatcaaattcttaggcgtcaaaatagctctatctctaaaaaaactctgaatcattcatattatgcaaaatagaagggtaaatgcact 38895078  T
Q  210 ctgcaattgacgcaacatgatcacctgaactac 242  Q
    || |||| || ||||||||||||| ||||||||    
T  38895079 ctacaatagatgcaacatgatcacttgaactac 38895111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 36155125 - 36155022
Alignment:
Q  50 ggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattg 149  Q
    |||||||||||||||| ||||||| ||||||||||| | | ||||||||  | ||||| |||||| || || ||||| ||||| || || ||||| || |    
T  36155125 ggtgaatcacaactcagatatatcttttcttcaccatggaccaaagacaacatataatcattaatttcctcaacaatgacatttttgggtgtcaatatgg 36155026  T
Q  150 ctct 153  Q
    ||||    
T  36155025 ctct 36155022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 17689010 - 17688950
Alignment:
Q  53 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaa 113  Q
    |||||||||||||||||| |||||||||| ||||  || | ||||| |||||| |||||||    
T  17689010 gaatcacaactcaaatatgtcctttcttcgccagaaatgagagacagaacatagttattaa 17688950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 31687215 - 31687155
Alignment:
Q  53 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaa 113  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| |||||||    
T  31687215 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacagaacatagttattaa 31687155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 19252415 - 19252517
Alignment:
Q  8 tggacatcatcaggcctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataat 107  Q
    |||||||||||||| ||||| |||||||| || || ||||||| || ||||||||||||||| | | ||||||| |||||||||| ||||||||||||||    
T  19252415 tggacatcatcaggtctatttgcaacagtgctgctcgggcaagatgtatcacaactcaaatacaccttttcttcgccaggtatcatagacataacataat 19252514  T
Q  108 tat 110  Q
    |||    
T  19252515 tat 19252517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 25226318 - 25226214
Alignment:
Q  53 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 152  Q
    |||||| ||||||||||| ||||||||||||| || || | ||||| |||||| ||||||| |||||| | |||   ||| ||||| ||||| ||||||     
T  25226318 gaatcataactcaaatatgtcctttcttcaccgggaatgagagacagaacatagttattaacctcatcaaaaattgtatttttaggagtcaatattgctt 25226219  T
Q  153 tatct 157  Q
    |||||    
T  25226218 tatct 25226214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 30443346 - 30443450
Alignment:
Q  53 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 152  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| ||||||| |||||| |||||   ||| ||||| ||||| ||||||     
T  30443346 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacaaaacatagttattaacctcatcaacaattgtatttttaggagtcaatattgctt 30443445  T
Q  153 tatct 157  Q
    |||||    
T  30443446 tatct 30443450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 8163474 - 8163401
Alignment:
Q  53 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaat 126  Q
    |||||||||||||||||| |||||||||| || |  || | ||||| |||||| ||||||| |||||| |||||    
T  8163474 gaatcacaactcaaatatgtcctttcttcgccggaaatgagagacagaacatagttattaacctcatcaacaat 8163401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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