View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21554_high_9 (Length: 358)
Name: NF21554_high_9
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 41380531 - 41380191
Alignment:
| Q |
10 |
caatgatgatgtctattttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttcaattgaagaac |
109 |
Q |
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| T |
41380531 |
caatgatgatgtctattttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttcaattgaagaac |
41380432 |
T |
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| Q |
110 |
aaatgaaggaaattgcttctattcaatgatattttt-gtgtgtggaagattcaatgannnnnnnnnncttgcttaaatgttttaagtgaagctttttt-g |
207 |
Q |
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| T |
41380431 |
aaatgaaggaaattgcttgtattcaatgatattttttgtgtgtggaagattcaatgattttttttt-cttgcttaaatgttttaagtgaagctttttttg |
41380333 |
T |
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| Q |
208 |
gtgagactttggttggtgtttgtatagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatagatgagaaaattaaactacag |
307 |
Q |
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| T |
41380332 |
gggagactttggttggtgtttgtatagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatggatgagaaaattaaactacag |
41380233 |
T |
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| Q |
308 |
atacattatatgagctaggttttgtaattttgttgatgatgt |
349 |
Q |
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| T |
41380232 |
atacattatatgagctaggttttgtaattttgttgaagatgt |
41380191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 8043677 - 8043819
Alignment:
| Q |
25 |
ttttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttcaattgaagaac-aaatgaaggaaatt |
123 |
Q |
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| T |
8043677 |
ttttctctatgatttgtttattttctgccaatgaactatctatttttcaatttcaatgtacatatttgagtttcaatggtagaacaaaatgaaggaaatt |
8043776 |
T |
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| Q |
124 |
gcttctattcaatgata-tttttgtgtgtggaagattcaatga |
165 |
Q |
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| T |
8043777 |
gtttctattcaatgatattttttgtgtgtggaagattcaatga |
8043819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 8033741 - 8033814
Alignment:
| Q |
25 |
ttttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttc |
98 |
Q |
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| T |
8033741 |
ttttctctatgatttatttattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttc |
8033814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 349
Target Start/End: Original strand, 8033905 - 8034027
Alignment:
| Q |
232 |
tagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgt---aaaaatagatgagaaaattaaactacagatacattata----tgagcta |
324 |
Q |
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| T |
8033905 |
tagcatctataatagatgcttggttgaagtacaaaa-ttagaaagtattaaaaaaaaaaatgagaaa-ttaagctacagatacattatatatatgagcta |
8034002 |
T |
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| Q |
325 |
ggttttgtaattttgttgatgatgt |
349 |
Q |
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| T |
8034003 |
ggttttgtaattttgttgaagatgt |
8034027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 341
Target Start/End: Original strand, 8043890 - 8043995
Alignment:
| Q |
237 |
tctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatagatgagaaaa-ttaaactacagatacattatatgagctaggttttgtaat |
335 |
Q |
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| T |
8043890 |
tctataatagatgcttgattgatgtacaacacatagaaactatgaaaaaggatgagaaaaattaaactacagatacataatatgagttaggttttataat |
8043989 |
T |
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| Q |
336 |
tttgtt |
341 |
Q |
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| T |
8043990 |
tttgtt |
8043995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 349
Target Start/End: Complemental strand, 7969879 - 7969753
Alignment:
| Q |
232 |
tagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaa-------tagatgagaaaattaaactacagatacattatat----ga |
320 |
Q |
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| T |
7969879 |
tagcatctataatagatgcttgattgaagtacaaaa-ttagaaagtattaaaaaaatatatatatgagaaa-ttaagctacagatacattatatatatga |
7969782 |
T |
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| Q |
321 |
gctaggttttgtaattttgttgatgatgt |
349 |
Q |
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| T |
7969781 |
gctaggttttgtaattttgttgaagatgt |
7969753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 7970059 - 7969970
Alignment:
| Q |
10 |
caatgatgatgtctattttctctatgattgatt-tatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttc |
98 |
Q |
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| T |
7970059 |
caatgatgatatctattttctctatgcttttctctattttctggcaatgaactatctattttccaatttcaatgcacataactgagtttc |
7969970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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