View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21554_low_1 (Length: 686)
Name: NF21554_low_1
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_1 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 570; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 18 - 673
Target Start/End: Complemental strand, 41381178 - 41380519
Alignment:
| Q |
18 |
caatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41381178 |
caatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgt |
41381079 |
T |
|
| Q |
118 |
gggtaagtgaaataaagtagtgtacaactttggatttttaatgactacgaatgatgtattttcttttggttttatgtgtttgcattgnnnnnnnncagca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41381078 |
gggtaagtgaaataaagtagtgtacaactttggatttttaatgactacgaatgatgtattttcttttggttttatgtgtttgcattgttttttttcagca |
41380979 |
T |
|
| Q |
218 |
ttaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagccatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41380978 |
ttaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagccatg |
41380879 |
T |
|
| Q |
318 |
agaaattgtaaacataattactaaattttcttagataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgtggctta |
417 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41380878 |
agaaattgtaaatataattactaaattttcttagataatcataatcttactcatcttttcattctattaaattttcagcttccatgtatcatgtggctta |
41380779 |
T |
|
| Q |
418 |
aactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagnnnnnnnaataatgtta- |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41380778 |
aactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagtttttttaataatgttat |
41380679 |
T |
|
| Q |
517 |
---taagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagta |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41380678 |
aattaagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgtataatgattctagcacccattggagcattgaggagta |
41380579 |
T |
|
| Q |
614 |
ttatacttgaagccaagacctaccagttttactcttaaactccttggcaatgatgatgtc |
673 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41380578 |
ttatccttgaagccaagtcctaccagttttactcttaaactccttgacaatgatgatgtc |
41380519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 213 - 312
Target Start/End: Original strand, 43855153 - 43855252
Alignment:
| Q |
213 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
312 |
Q |
| |
|
||||||| |||||||| | | ||| ||||||||||| ||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||||||||| |
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|
| T |
43855153 |
cagcattcacaatgtttgtgggcataaccttcccattctttggtgctctccttggattttttggaggattggcatttgctcccacaacatattttgtaag |
43855252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 43856729 - 43856685
Alignment:
| Q |
269 |
ttttttggaggatttgcttttgctccaacaacatattttgtaagc |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
43856729 |
ttttttggaggatttgtttttgctccaatgacatactttgtaagc |
43856685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 213 - 649
Target Start/End: Complemental strand, 7970554 - 7970105
Alignment:
| Q |
213 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
312 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7970554 |
cagcattaacaatgttcattgccattaccttcccatttttcggtggcctcttaggattttttggaggatttgcttttgcgccaacaacatattttgtaag |
7970455 |
T |
|
| Q |
313 |
ccatgagaaa-ttgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatg |
410 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7970454 |
ccatgagaaaattgtaaatataattactaaattttcttaggataatcataatcttgcttaacttttcattctattaaattttcagcttccatgtatcatg |
7970355 |
T |
|
| Q |
411 |
tggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgca----ttttttctctaag------- |
499 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
7970354 |
tggcttaaactctacaaaccaaaaagattcagcttatcttggtggattaattgggtaggtatctttaattattgtattttttttttctttaagttcttga |
7970255 |
T |
|
| Q |
500 |
nnnnnnnaataatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattgg |
599 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
7970254 |
ataatttattaatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgcataatgattttagcacccattgg |
7970155 |
T |
|
| Q |
600 |
agcattgaggagtattatacttgaagccaagacctaccagttttactctt |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970154 |
agcattgaggagtattatacttgaagccaagacctaccagttttactctt |
7970105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 213 - 649
Target Start/End: Original strand, 8043155 - 8043604
Alignment:
| Q |
213 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
312 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
8043155 |
cagcattaacaatgttcattgccattaccttcccatttttcggtggcctcttaggattttttggaggatttgcttttgctccagcaacatattatgtaag |
8043254 |
T |
|
| Q |
313 |
ccatgagaaattgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgt |
411 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
8043255 |
ccatgagaaattgtaaatgtaattactaaattttcttaggataatcataatcttgcttaacttttcattctattaaattttcagcttccatgtattgtgt |
8043354 |
T |
|
| Q |
412 |
ggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcatttt----ttctctaag-------n |
500 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||| |
|
|
| T |
8043355 |
ggcttaaactctacaaaccaaagagattcagcttgtcttggtggattaattgggtaggcatctttaattattgtatttttttcttctttaagttcttgaa |
8043454 |
T |
|
| Q |
501 |
nnnnnnaataatg-ttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattgg |
599 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
8043455 |
taatttattaatgtttataagcacatgtttaatatttgctccatatgttacagatatgtgttgttcttggggtatgtataatggttctagcacccattgg |
8043554 |
T |
|
| Q |
600 |
agcattgaggagtattatacttgaagccaagacctaccagttttactctt |
649 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8043555 |
agcattgaggagtattatacttgaagccaagacctaccagttttactctt |
8043604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 213 - 649
Target Start/End: Original strand, 8033219 - 8033668
Alignment:
| Q |
213 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
312 |
Q |
| |
|
||||||| ||||||||| | || ||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8033219 |
cagcattcacaatgttcattgctattacattcccatttttcggtggccttctaggattttttggaggattcgcttttgctccaacaacatattttgtaag |
8033318 |
T |
|
| Q |
313 |
ccatgagaaattgtaaacataattactaaattttctta-gataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgt |
411 |
Q |
| |
|
|||||| |||||||||| ||||| ||| ||||||||| ||| |||||||| || |||||||||||||| || || | |||||||||||||||||||||| |
|
|
| T |
8033319 |
ccatgaaaaattgtaaatataatcactggattttcttaggattatcataattttgctcatcttttcattatattaca-tttcagcttccatgtatcatgt |
8033417 |
T |
|
| Q |
412 |
ggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctcta----------agnn |
501 |
Q |
| |
|
|||| | || ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
8033418 |
ggctaatcctttacaaaccaaagagattcagcttctcttggtggactaattgggtaggtatctttaattattgtttgttttctctatcaactttataata |
8033517 |
T |
|
| Q |
502 |
nnnnnaataatgttataagcacatgtttaa--tatttgctcca-tatattacagatatgtattgttcttggggttagtataatgattctagcacccattg |
598 |
Q |
| |
|
||| ||||||| |||||||||||| | ||||||| | | | ||||||||| |||||||| |||| | ||||||||||| | |||||||||| |
|
|
| T |
8033518 |
taatttatattgttatatgcacatgtttaatttctttgctctattttgttacagataagtattgttattggcttatgtataatgattttggcacccattg |
8033617 |
T |
|
| Q |
599 |
gagcattgaggagtattatacttgaagccaagacctaccagttttactctt |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8033618 |
gagcattgaggagtattatacttgaagccaagacctaccagttttactctt |
8033668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 8042981 - 8043119
Alignment:
| Q |
20 |
atgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgtgg |
119 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8042981 |
atgccagtgtttgacttgattgaaaataagtggttggtggagaaactgaatttcaaatcaagtaaaatgcttcgttttgttgtgcgtaatgtatacgtgg |
8043080 |
T |
|
| Q |
120 |
gtaagtgaaataaagtagtgtacaactttggatttttaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8043081 |
gtaagtgaaataaagtagtgtacaactttgattttttaa |
8043119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 7970730 - 7970590
Alignment:
| Q |
18 |
caatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgt |
117 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
7970730 |
caatgccagtgtttgacttgattgaaaataagtggttggtggagaaactgaatttcaaatcaagtaaaatgcttcgttttattgtgcgtaatgtatacgt |
7970631 |
T |
|
| Q |
118 |
gggtaagtgaaataaagtagtgtacaactttggatttttaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7970630 |
gggtaagtgaaataaagtagtgtacaactttgattttttaa |
7970590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 7977326 - 7977223
Alignment:
| Q |
213 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
312 |
Q |
| |
|
||||||| ||||||||| | || ||||| ||||||||||| | |||||| || || ||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
7977326 |
cagcattcacaatgttcattgctattacattcccatttttcgatggccttctagggttttttggagggtttgcttttgctccaacaacatactttgtaag |
7977227 |
T |
|
| Q |
313 |
ccat |
316 |
Q |
| |
|
|||| |
|
|
| T |
7977226 |
ccat |
7977223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 8033001 - 8033118
Alignment:
| Q |
18 |
caatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgt |
117 |
Q |
| |
|
||||||||||||||||| | |||||| | || |||||| ||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
8033001 |
caatgccggtgtttgacatgattgaaggt---gttttggtgaagaaattgaatttcaaaccaagtaaaatcctccgttttgttgcgcgtaactcatacgt |
8033097 |
T |
|
| Q |
118 |
gggtaagtgaaataaagtagt |
138 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
8033098 |
gggtaagtgaaataaaatagt |
8033118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 387 - 472
Target Start/End: Complemental strand, 7976993 - 7976908
Alignment:
| Q |
387 |
aattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtat |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||| |||| | |||| ||||||| |||||| |||||||||| |||| |
|
|
| T |
7976993 |
aattttcagcttccatgtatcatgtggctttcaatctacaaaccaagaaaattcggcttgtcatggtgggctaattgggtatgtat |
7976908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 14197346 - 14197281
Alignment:
| Q |
248 |
ttttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagc |
313 |
Q |
| |
|
||||| ||||| || || ||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14197346 |
tttttcggtggtctactaggattttttggtggatttgcttttgctccaacaacatactttgtaagc |
14197281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 385 - 455
Target Start/End: Complemental strand, 14197211 - 14197141
Alignment:
| Q |
385 |
taaattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtgg |
455 |
Q |
| |
|
||||||||||||| ||||| || ||||||||| | ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
14197211 |
taaattttcagctaccatgcataatgtggcttgcaatctacaaaccaaggagattcagcttgtcttggtgg |
14197141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 2104 - 2001
Alignment:
| Q |
18 |
caatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagtaaaatccttcgttttgttgtgcgtaatgtatacgt |
117 |
Q |
| |
|
||||||||||||||||| | |||||| | || |||||| ||||||||||||||||| ||||| ||||| || |||||||||||||| ||||||| |
|
|
| T |
2104 |
caatgccggtgtttgacatgattgaaggt---gttttggtgaagaaattgaatttcaaaccaagtgccatcctacgctttgttgtgcgtaacatatacgt |
2008 |
T |
|
| Q |
118 |
gggtaag |
124 |
Q |
| |
|
||||||| |
|
|
| T |
2007 |
gggtaag |
2001 |
T |
|
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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 452
Target Start/End: Original strand, 34410575 - 34410630
Alignment:
| Q |
397 |
ttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttgg |
452 |
Q |
| |
|
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|
|
| T |
34410575 |
ttccatgtatcatatggcttaaactttacaaacctaagagatttggcttgtcttgg |
34410630 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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