View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21554_low_10 (Length: 304)
Name: NF21554_low_10
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 46420239 - 46420521
Alignment:
| Q |
5 |
caacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttcttttaaccg |
104 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46420239 |
caacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttcttataaccg |
46420338 |
T |
|
| Q |
105 |
aaccaccattttaggtgcgaatctgagccccattttcactgatcaaacaaaataagatcgttttcttcatcccctcaacaagagctttctattggtccct |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46420339 |
aaccaccattttaggtgcgaatctgagccccattttcactgatcaaagaaaataagatcgttttcttcatcccctcaacaagagctttctattggtccct |
46420438 |
T |
|
| Q |
205 |
ttagtttcacaaaaggacaannnnnnncgtgacccatttccccgccgccatgcaatcatacatagccaccgtgccggagtttg |
287 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||||||||| |
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| T |
46420439 |
ttagtttcaccaaaggacaatttttttcgtgacccatttccccgccgccgtgtaatcatacatagccaccgcgccggagtttg |
46420521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 3017890 - 3017615
Alignment:
| Q |
5 |
caacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttcttttaaccg |
104 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3017890 |
caacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttctta-------taaccg |
3017798 |
T |
|
| Q |
105 |
aaccaccattttaggtgcgaatctgagccccattttcactgatcaaacaaaataagatcgttttcttcatcccctcaacaagagctttctattggtccct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017797 |
aaccaccattttaggtgcgaatctgagccccattttcactgatcaaacaaaataagatcgttttcttcatcccctcaacaagagctttctattggtccct |
3017698 |
T |
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| Q |
205 |
ttagtttcacaaaaggacaannnnnnncgtgacccatttccccgccgccatgcaatcatacatagccaccgtgccggagtttg |
287 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3017697 |
ttagtttcacaaaaggacaatttttttcgtgacccatttccccgccgccgtgcaatcatacatagccaccgtgccggagtttg |
3017615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 287
Target Start/End: Complemental strand, 34344173 - 34343891
Alignment:
| Q |
6 |
aacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttcttttaaccga |
105 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34344173 |
aacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttcttacaaccga |
34344074 |
T |
|
| Q |
106 |
accaccattttaggtgcgaatctgagccccattttcactgatcaaacaaaataagatcgttttcttcatcccctcaacaagagctttctattggtccctt |
205 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34344073 |
accaccattttaggtgcgaatctgagccccattttcactgatcaaacaaaataagatcgttttcttcatcccctcaacaatagctttctattggtccctt |
34343974 |
T |
|
| Q |
206 |
tagtttcacaaaaggacaannnnnnncgtgacccattt-ccccgccgccatgcaatcatacatagccaccgtgccggagtttg |
287 |
Q |
| |
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||||||||| ||||||||| |||||||||||| ||||||||| ||||||||||||||| ||||| ||| ||||||| |
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| T |
34343973 |
tagtttcaccaaaggacaatttttttcgtgacccatttcccccgccgctgtgcaatcatacatagtcaccgcgccagagtttg |
34343891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 37278789 - 37278921
Alignment:
| Q |
82 |
ttccttcttccttcttttaaccgaaccaccattttaggtgcgaatctgagccccattttcactgatcaaacaaaataagatcgttttcttcatcccctca |
181 |
Q |
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|
|||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37278789 |
ttccttcttccttcttataaccgaaccaccatttttggtgcaaatttgagccccattttcactgatcaaacaaagtaagatcgttttcttcatcccctca |
37278888 |
T |
|
| Q |
182 |
acaagagctttctattggtccctttagtttcac |
214 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
37278889 |
acgagagctttctattggtccctttagtttcac |
37278921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 37278647 - 37278740
Alignment:
| Q |
5 |
caacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttcttt |
98 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
37278647 |
caacattttcttttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttgccattcttcctttttccttcttt |
37278740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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