View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21554_low_14 (Length: 254)
Name: NF21554_low_14
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_14 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 25771241 - 25771004
Alignment:
| Q |
2 |
gcatattggagatgagacaccttcacatgagaatcaagaattttataccctttnnnnnnngttgagctctaccgccttcgaaattaaagcccctaaaccc |
101 |
Q |
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| T |
25771241 |
gcatattggagatgagacaccttcacatgagaatcaagaattttataccctttaaaaaaagttgagctcta---------------aagcccctaaaccc |
25771157 |
T |
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| Q |
102 |
tccataacgaagaaaaagggaaaaggcgacaatggacttcctttcttaggacccttacgtttaaccgcttccttcgtcagacaaccattttccgaaagta |
201 |
Q |
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| T |
25771156 |
tccataacgaagaaaaagggaaaaggcgacaatggacttcctttcttaggacccttacgtataaccgcttccttcgtcagataaccattttccaaaagta |
25771057 |
T |
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| Q |
202 |
ataatgatcctaaaagcacacatgctcaaatccaccccctccacttcccatca |
254 |
Q |
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| T |
25771056 |
ataatgatcctaaaagcacacatgctcaaatccaccccatccacttcccatca |
25771004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 25754548 - 25754436
Alignment:
| Q |
141 |
cctttcttaggacccttacgtttaaccgcttccttcgtcagacaaccattttccgaaagtaataatgatcctaaaagcacacatgctcaaatccaccccc |
240 |
Q |
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|||| ||||||||||||||| ||||| |||| || ||| ||||||||||| | ||| |||||||| || ||||| ||||||||| |||||||||| |
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| T |
25754548 |
ccttgcttaggacccttacgaataaccacttcttttgtccgacaaccatttacgaaaaccaataatgacgct-gaagcaaacatgctcacatccaccccc |
25754450 |
T |
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| Q |
241 |
tccacttcccatca |
254 |
Q |
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| T |
25754449 |
tccacttcccatca |
25754436 |
T |
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