View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21554_low_15 (Length: 253)
Name: NF21554_low_15
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 1442903 - 1443124
Alignment:
| Q |
3 |
tcaagagcttgcagacacacttgagtgtcaatagcgacttcaaagggagcctgcaaaagatttctaacaccagatcaagtgataacggagcaaacatgcc |
102 |
Q |
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| T |
1442903 |
tcaagagcttgcagacttacttgagtgtcaatagcgacttcaaagggagcctgtaaaagatttctaacaccagatcaagtgataacagagcaaacatgcc |
1443002 |
T |
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| Q |
103 |
gagggtgtctgacgagttttgatttctttctgtagtcaacagctgatgaatgaagtattcaacatggttgttaaaccttgtgagtacctgcgcaaaaaac |
202 |
Q |
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| T |
1443003 |
gagggtgtctgacgagttttgatttctttctgtagtcaacagctgatgaatgaagtattcaacatggttgttaaaccttgtgagtacctgcgcaaaaaac |
1443102 |
T |
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| Q |
203 |
taaatagggttagggttagggt |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
1443103 |
taaatagggttagggttagggt |
1443124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 175524 - 175409
Alignment:
| Q |
15 |
agacacacttgagtgtcaatagcgacttcaaagggagcctgcaaaagatttctaacaccagatcaagtgataacggagcaaacatgccgagggtgtctga |
114 |
Q |
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| T |
175524 |
agacacagttgagtgtcaagagtgacttgataggggtcctgtacagaatttctaacagcagatcgagagatagcagagcaaacaggccgagggggtctga |
175425 |
T |
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| Q |
115 |
cgagttttgatttctt |
130 |
Q |
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| T |
175424 |
caagttttgttttctt |
175409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 371587 - 371657
Alignment:
| Q |
1 |
attcaagagcttgcagacacacttgagtgtcaatagcgacttcaaagggagcctgcaaaagatttctaaca |
71 |
Q |
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| T |
371587 |
attcaagggcttgcagacacacttgagtgtcaagagtgacttcacggcgagcctgtacaagatttccaaca |
371657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 1460331 - 1460453
Alignment:
| Q |
1 |
attcaagagcttgcagacacacttgagtgtcaatagcgacttcaaagggagcctgcaaaagatttctaacaccagatcaagtgataacggagcaaacatg |
100 |
Q |
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||||||| ||||| | ||||||||||||||||| || || |||| |||||| | | | || ||||||||||| ||||| |||||||| || ||||| | |
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| T |
1460331 |
attcaagggcttggaaacacacttgagtgtcaagagtgatttcacagggagaccgtacaaaatttctaacactagatctggtgataacaaagaaaacagg |
1460430 |
T |
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| Q |
101 |
ccgagggtgtctgacgagttttg |
123 |
Q |
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||||||| ||| ||| ||||||| |
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| T |
1460431 |
ccgagggggtccgacaagttttg |
1460453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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